Gene : Phvul.008G024400 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  250
Name:  ? Phvul.008G024400 Secondary Identifier:  ? PAC:37159661
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G024400 0.5kb upstream 0.5kb upstream 4459 true Chr08: 2004322-2008780 Phaseolus vulgaris
Phvul.008G024400 0.5kb upstream 0.5kb upstream 500 false Chr08: 2008281-2008780 Phaseolus vulgaris
Phvul.008G024400 0.5kb downstream 0.5kb downstream 4459 true Chr08: 2003822-2008280 Phaseolus vulgaris
Phvul.008G024400 0.5kb downstream 0.5kb downstream 500 false Chr08: 2003822-2004321 Phaseolus vulgaris
Phvul.008G024400 1.0kb upstream 1.0kb upstream 4959 true Chr08: 2004322-2009280 Phaseolus vulgaris
Phvul.008G024400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2008281-2009280 Phaseolus vulgaris
Phvul.008G024400 1.0kb downstream 1.0kb downstream 4959 true Chr08: 2003322-2008280 Phaseolus vulgaris
Phvul.008G024400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2003322-2004321 Phaseolus vulgaris
Phvul.008G024400 2.0kb upstream 2.0kb upstream 5959 true Chr08: 2004322-2010280 Phaseolus vulgaris
Phvul.008G024400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2008281-2010280 Phaseolus vulgaris
Phvul.008G024400 2.0kb downstream 2.0kb downstream 5959 true Chr08: 2002322-2008280 Phaseolus vulgaris
Phvul.008G024400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2002322-2004321 Phaseolus vulgaris
Phvul.008G024400 5.0kb upstream 5.0kb upstream 8959 true Chr08: 2004322-2013280 Phaseolus vulgaris
Phvul.008G024400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2008281-2013280 Phaseolus vulgaris
Phvul.008G024400 5.0kb downstream 5.0kb downstream 8959 true Chr08: 1999322-2008280 Phaseolus vulgaris
Phvul.008G024400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1999322-2004321 Phaseolus vulgaris
Phvul.008G024400 10.0kb upstream 10.0kb upstream 13959 true Chr08: 2004322-2018280 Phaseolus vulgaris
Phvul.008G024400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2008281-2018280 Phaseolus vulgaris
Phvul.008G024400 10.0kb downstream 10.0kb downstream 13959 true Chr08: 1994322-2008280 Phaseolus vulgaris
Phvul.008G024400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1994322-2004321 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302059 5265 Fabidae View MSA
124061005 5270 Rosid View MSA
123740775 5271 Pentapetalae View MSA
122785854 5272 Eudicot View MSA
122042693 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346514 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.75514 0.0 17.9247    
cufflinks 14.2457 0.0 36.8228    
cufflinks 39.64 0.0 107.543 High High
cufflinks 5.70407 0.0 15.4207   Low
cufflinks 15.9471 0.0 41.2283    
cufflinks 28.3787 0.0 74.9566   High
cufflinks 7.34493 0.0 19.3844    
cufflinks 8.10466 0.0 21.231    
cufflinks 6.66945 0.0 17.7422    
cufflinks 12.971 0.0 33.5478    
cufflinks 13.1479 0.0 34.0113    

0 Strain