Gene : Phvul.008G013400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR18896:SF65 - PHOSPHOLIPASE D BETA 1-RELATED Genomic Order:  134
Name:  ? Phvul.008G013400 Secondary Identifier:  ? PAC:37161240
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris LIPASYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7039 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G013400 0.5kb upstream 0.5kb upstream 8763 true Chr08: 1096210-1104972 Phaseolus vulgaris
Phvul.008G013400 0.5kb upstream 0.5kb upstream 500 false Chr08: 1096210-1096709 Phaseolus vulgaris
Phvul.008G013400 0.5kb downstream 0.5kb downstream 8763 true Chr08: 1096710-1105472 Phaseolus vulgaris
Phvul.008G013400 0.5kb downstream 0.5kb downstream 500 false Chr08: 1104973-1105472 Phaseolus vulgaris
Phvul.008G013400 1.0kb upstream 1.0kb upstream 9263 true Chr08: 1095710-1104972 Phaseolus vulgaris
Phvul.008G013400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1095710-1096709 Phaseolus vulgaris
Phvul.008G013400 1.0kb downstream 1.0kb downstream 9263 true Chr08: 1096710-1105972 Phaseolus vulgaris
Phvul.008G013400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1104973-1105972 Phaseolus vulgaris
Phvul.008G013400 2.0kb upstream 2.0kb upstream 10263 true Chr08: 1094710-1104972 Phaseolus vulgaris
Phvul.008G013400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1094710-1096709 Phaseolus vulgaris
Phvul.008G013400 2.0kb downstream 2.0kb downstream 10263 true Chr08: 1096710-1106972 Phaseolus vulgaris
Phvul.008G013400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1104973-1106972 Phaseolus vulgaris
Phvul.008G013400 5.0kb upstream 5.0kb upstream 13263 true Chr08: 1091710-1104972 Phaseolus vulgaris
Phvul.008G013400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1091710-1096709 Phaseolus vulgaris
Phvul.008G013400 5.0kb downstream 5.0kb downstream 13263 true Chr08: 1096710-1109972 Phaseolus vulgaris
Phvul.008G013400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1104973-1109972 Phaseolus vulgaris
Phvul.008G013400 10.0kb upstream 10.0kb upstream 18263 true Chr08: 1086710-1104972 Phaseolus vulgaris
Phvul.008G013400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1086710-1096709 Phaseolus vulgaris
Phvul.008G013400 10.0kb downstream 10.0kb downstream 18263 true Chr08: 1096710-1114972 Phaseolus vulgaris
Phvul.008G013400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1104973-1114972 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306033 5265 Fabidae View MSA
124072300 5270 Rosid View MSA
123749008 5271 Pentapetalae View MSA
122790888 5272 Eudicot View MSA
122043294 5273 Angiosperm View MSA
121349961 5274 Embryophyte View MSA
123381517 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.72217 0.0 31.4125    
cufflinks 7.07344 0.0 23.6046   Low
cufflinks 7.84495 0.0 25.6365    
cufflinks 6.31773 0.0 21.4012   Low
cufflinks 10.9436 0.0 35.0445    
cufflinks 8.04061 0.0 26.1393    
cufflinks 15.6726 0.0 50.629   High
cufflinks 9.2231 0.0 29.8316    
cufflinks 16.6454 0.0 53.593   High
cufflinks 20.0115 0.0 65.0481   High
cufflinks 11.0475 0.0 35.575    

0 Strain