Gene : Phvul.009G239200 P. vulgaris v2.1
Defline:  (1 of 5) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Genomic Order:  2440
Name:  ? Phvul.009G239200 Secondary Identifier:  ? PAC:37150715
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G239200 0.5kb upstream 0.5kb upstream 2435 true Chr09: 35817314-35819748 Phaseolus vulgaris
Phvul.009G239200 0.5kb upstream 0.5kb upstream 500 false Chr09: 35817314-35817813 Phaseolus vulgaris
Phvul.009G239200 0.5kb downstream 0.5kb downstream 2435 true Chr09: 35817814-35820248 Phaseolus vulgaris
Phvul.009G239200 0.5kb downstream 0.5kb downstream 500 false Chr09: 35819749-35820248 Phaseolus vulgaris
Phvul.009G239200 1.0kb upstream 1.0kb upstream 2935 true Chr09: 35816814-35819748 Phaseolus vulgaris
Phvul.009G239200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 35816814-35817813 Phaseolus vulgaris
Phvul.009G239200 1.0kb downstream 1.0kb downstream 2935 true Chr09: 35817814-35820748 Phaseolus vulgaris
Phvul.009G239200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 35819749-35820748 Phaseolus vulgaris
Phvul.009G239200 2.0kb upstream 2.0kb upstream 3935 true Chr09: 35815814-35819748 Phaseolus vulgaris
Phvul.009G239200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 35815814-35817813 Phaseolus vulgaris
Phvul.009G239200 2.0kb downstream 2.0kb downstream 3935 true Chr09: 35817814-35821748 Phaseolus vulgaris
Phvul.009G239200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 35819749-35821748 Phaseolus vulgaris
Phvul.009G239200 5.0kb upstream 5.0kb upstream 6935 true Chr09: 35812814-35819748 Phaseolus vulgaris
Phvul.009G239200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 35812814-35817813 Phaseolus vulgaris
Phvul.009G239200 5.0kb downstream 5.0kb downstream 6935 true Chr09: 35817814-35824748 Phaseolus vulgaris
Phvul.009G239200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 35819749-35824748 Phaseolus vulgaris
Phvul.009G239200 10.0kb upstream 10.0kb upstream 11935 true Chr09: 35807814-35819748 Phaseolus vulgaris
Phvul.009G239200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 35807814-35817813 Phaseolus vulgaris
Phvul.009G239200 10.0kb downstream 10.0kb downstream 11935 true Chr09: 35817814-35829748 Phaseolus vulgaris
Phvul.009G239200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 35819749-35829748 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309903 5265 Fabidae View MSA
124065938 5270 Rosid View MSA
123738887 5271 Pentapetalae View MSA
122785902 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.093 0.0 21.8709    
cufflinks 6.77247 0.0 18.5836    
cufflinks 28.0883 0.0 72.8632   High
cufflinks 20.153 0.0 52.1799   High
cufflinks 6.47701 0.0 17.9825    
cufflinks 23.5691 0.0 60.9413   High
cufflinks 2.58379 0.0 7.8223   Low
cufflinks 1.91556 0.0 5.97946   Low
cufflinks 2.45793 0.0 7.51672   Low
cufflinks 6.61673 0.0 18.2279    
cufflinks 4.4762 0.0 12.8313    

0 Strain