Gene : Phvul.009G235800 P. vulgaris v2.1
Defline:  (1 of 1) K10777 - DNA ligase 4 (LIG4, DNL4) Genomic Order:  2407
Name:  ? Phvul.009G235800 Secondary Identifier:  ? PAC:37150149
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G235800 0.5kb upstream 0.5kb upstream 16024 true Chr09: 35353240-35369263 Phaseolus vulgaris
Phvul.009G235800 0.5kb upstream 0.5kb upstream 500 false Chr09: 35368764-35369263 Phaseolus vulgaris
Phvul.009G235800 0.5kb downstream 0.5kb downstream 16024 true Chr09: 35352740-35368763 Phaseolus vulgaris
Phvul.009G235800 0.5kb downstream 0.5kb downstream 500 false Chr09: 35352740-35353239 Phaseolus vulgaris
Phvul.009G235800 1.0kb upstream 1.0kb upstream 16524 true Chr09: 35353240-35369763 Phaseolus vulgaris
Phvul.009G235800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 35368764-35369763 Phaseolus vulgaris
Phvul.009G235800 1.0kb downstream 1.0kb downstream 16524 true Chr09: 35352240-35368763 Phaseolus vulgaris
Phvul.009G235800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 35352240-35353239 Phaseolus vulgaris
Phvul.009G235800 2.0kb upstream 2.0kb upstream 17524 true Chr09: 35353240-35370763 Phaseolus vulgaris
Phvul.009G235800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 35368764-35370763 Phaseolus vulgaris
Phvul.009G235800 2.0kb downstream 2.0kb downstream 17524 true Chr09: 35351240-35368763 Phaseolus vulgaris
Phvul.009G235800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 35351240-35353239 Phaseolus vulgaris
Phvul.009G235800 5.0kb upstream 5.0kb upstream 20524 true Chr09: 35353240-35373763 Phaseolus vulgaris
Phvul.009G235800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 35368764-35373763 Phaseolus vulgaris
Phvul.009G235800 5.0kb downstream 5.0kb downstream 20524 true Chr09: 35348240-35368763 Phaseolus vulgaris
Phvul.009G235800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 35348240-35353239 Phaseolus vulgaris
Phvul.009G235800 10.0kb upstream 10.0kb upstream 25524 true Chr09: 35353240-35378763 Phaseolus vulgaris
Phvul.009G235800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 35368764-35378763 Phaseolus vulgaris
Phvul.009G235800 10.0kb downstream 10.0kb downstream 25524 true Chr09: 35343240-35368763 Phaseolus vulgaris
Phvul.009G235800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 35343240-35353239 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307515 5265 Fabidae View MSA
124066259 5270 Rosid View MSA
123748643 5271 Pentapetalae View MSA
122787045 5272 Eudicot View MSA
122045949 5273 Angiosperm View MSA
121346093 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.852465 0.0 2.91302   Low
cufflinks 2.29988 0.0 9.30592    
cufflinks 2.58502 0.0 8.59791    
cufflinks 1.02349 0.0 3.46848   Low
cufflinks 2.7065 0.0 10.7019    
cufflinks 3.06974 0.0 11.598    
cufflinks 4.7668 0.0 16.4915   High
cufflinks 4.73553 0.0 16.4886   High
cufflinks 3.95879 0.0 14.1723    
cufflinks 4.5613 0.0 15.978    
cufflinks 1.90096 0.0 6.98558    

0 Strain