Gene : Phvul.008G125400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22847//PTHR22847:SF473 - WD40 REPEAT PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1282
Name:  ? Phvul.008G125400 Secondary Identifier:  ? PAC:37158952
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G125400 0.5kb upstream 0.5kb upstream 9060 true Chr08: 19337656-19346715 Phaseolus vulgaris
Phvul.008G125400 0.5kb upstream 0.5kb upstream 500 false Chr08: 19346216-19346715 Phaseolus vulgaris
Phvul.008G125400 0.5kb downstream 0.5kb downstream 9060 true Chr08: 19337156-19346215 Phaseolus vulgaris
Phvul.008G125400 0.5kb downstream 0.5kb downstream 500 false Chr08: 19337156-19337655 Phaseolus vulgaris
Phvul.008G125400 1.0kb upstream 1.0kb upstream 9560 true Chr08: 19337656-19347215 Phaseolus vulgaris
Phvul.008G125400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 19346216-19347215 Phaseolus vulgaris
Phvul.008G125400 1.0kb downstream 1.0kb downstream 9560 true Chr08: 19336656-19346215 Phaseolus vulgaris
Phvul.008G125400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 19336656-19337655 Phaseolus vulgaris
Phvul.008G125400 2.0kb upstream 2.0kb upstream 10560 true Chr08: 19337656-19348215 Phaseolus vulgaris
Phvul.008G125400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 19346216-19348215 Phaseolus vulgaris
Phvul.008G125400 2.0kb downstream 2.0kb downstream 10560 true Chr08: 19335656-19346215 Phaseolus vulgaris
Phvul.008G125400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 19335656-19337655 Phaseolus vulgaris
Phvul.008G125400 5.0kb upstream 5.0kb upstream 13560 true Chr08: 19337656-19351215 Phaseolus vulgaris
Phvul.008G125400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 19346216-19351215 Phaseolus vulgaris
Phvul.008G125400 5.0kb downstream 5.0kb downstream 13560 true Chr08: 19332656-19346215 Phaseolus vulgaris
Phvul.008G125400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 19332656-19337655 Phaseolus vulgaris
Phvul.008G125400 10.0kb upstream 10.0kb upstream 18560 true Chr08: 19337656-19356215 Phaseolus vulgaris
Phvul.008G125400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 19346216-19356215 Phaseolus vulgaris
Phvul.008G125400 10.0kb downstream 10.0kb downstream 18560 true Chr08: 19327656-19346215 Phaseolus vulgaris
Phvul.008G125400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 19327656-19337655 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306569 5265 Fabidae View MSA
124070895 5270 Rosid View MSA
123751820 5271 Pentapetalae View MSA
122789823 5272 Eudicot View MSA
122046787 5273 Angiosperm View MSA
123429146 5275 Viridiplantae View MSA
121350041 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.41085 0.0 19.0993   Low
cufflinks 9.24093 0.0 30.1217    
cufflinks 20.7511 0.0 68.5119   High
cufflinks 4.52386 0.0 16.8639   Low
cufflinks 10.997 0.0 35.4987    
cufflinks 13.8515 0.0 44.0447    
cufflinks 13.7273 0.0 43.6473    
cufflinks 11.4933 0.0 36.7092    
cufflinks 9.80415 0.0 32.98    
cufflinks 23.0108 0.0 74.3816   High
cufflinks 10.6447 0.0 34.4442    

0 Strain