Gene : Phvul.008G104000 P. vulgaris v2.1
Defline:  (1 of 1) K14827 - pre-rRNA-processing protein IPI1 (IPI1, TEX10) Genomic Order:  1019
Name:  ? Phvul.008G104000 Secondary Identifier:  ? PAC:37158846
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G104000 0.5kb upstream 0.5kb upstream 22517 true Chr08: 11329945-11352461 Phaseolus vulgaris
Phvul.008G104000 0.5kb upstream 0.5kb upstream 500 false Chr08: 11351962-11352461 Phaseolus vulgaris
Phvul.008G104000 0.5kb downstream 0.5kb downstream 22517 true Chr08: 11329445-11351961 Phaseolus vulgaris
Phvul.008G104000 0.5kb downstream 0.5kb downstream 500 false Chr08: 11329445-11329944 Phaseolus vulgaris
Phvul.008G104000 1.0kb upstream 1.0kb upstream 23017 true Chr08: 11329945-11352961 Phaseolus vulgaris
Phvul.008G104000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11351962-11352961 Phaseolus vulgaris
Phvul.008G104000 1.0kb downstream 1.0kb downstream 23017 true Chr08: 11328945-11351961 Phaseolus vulgaris
Phvul.008G104000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11328945-11329944 Phaseolus vulgaris
Phvul.008G104000 2.0kb upstream 2.0kb upstream 24017 true Chr08: 11329945-11353961 Phaseolus vulgaris
Phvul.008G104000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11351962-11353961 Phaseolus vulgaris
Phvul.008G104000 2.0kb downstream 2.0kb downstream 24017 true Chr08: 11327945-11351961 Phaseolus vulgaris
Phvul.008G104000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11327945-11329944 Phaseolus vulgaris
Phvul.008G104000 5.0kb upstream 5.0kb upstream 27017 true Chr08: 11329945-11356961 Phaseolus vulgaris
Phvul.008G104000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11351962-11356961 Phaseolus vulgaris
Phvul.008G104000 5.0kb downstream 5.0kb downstream 27017 true Chr08: 11324945-11351961 Phaseolus vulgaris
Phvul.008G104000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11324945-11329944 Phaseolus vulgaris
Phvul.008G104000 10.0kb upstream 10.0kb upstream 32017 true Chr08: 11329945-11361961 Phaseolus vulgaris
Phvul.008G104000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11351962-11361961 Phaseolus vulgaris
Phvul.008G104000 10.0kb downstream 10.0kb downstream 32017 true Chr08: 11319945-11351961 Phaseolus vulgaris
Phvul.008G104000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11319945-11329944 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029601 5273 Angiosperm View MSA
122300482 5265 Fabidae View MSA
124068256 5270 Rosid View MSA
123740186 5271 Pentapetalae View MSA
122789427 5272 Eudicot View MSA
121346343 5274 Embryophyte View MSA
123424675 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.60098 0.0 6.5872   Low
cufflinks 2.97119 0.0 10.4791    
cufflinks 3.09531 0.0 11.1061    
cufflinks 1.31842 0.0 5.82943   Low
cufflinks 2.2698 0.0 8.69175    
cufflinks 2.87451 0.0 10.1749    
cufflinks 2.56752 0.0 9.42663    
cufflinks 3.77513 0.0 12.8784   High
cufflinks 2.95645 0.0 10.5579    
cufflinks 3.78513 0.0 13.1358   High
cufflinks 1.81015 0.0 7.35439    

0 Strain