Gene : Phvul.008G080100 P. vulgaris v2.1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  828
Name:  ? Phvul.008G080100 Secondary Identifier:  ? PAC:37161262
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G080100 0.5kb upstream 0.5kb upstream 4578 true Chr08: 7783978-7788555 Phaseolus vulgaris
Phvul.008G080100 0.5kb upstream 0.5kb upstream 500 false Chr08: 7783978-7784477 Phaseolus vulgaris
Phvul.008G080100 0.5kb downstream 0.5kb downstream 4578 true Chr08: 7784478-7789055 Phaseolus vulgaris
Phvul.008G080100 0.5kb downstream 0.5kb downstream 500 false Chr08: 7788556-7789055 Phaseolus vulgaris
Phvul.008G080100 1.0kb upstream 1.0kb upstream 5078 true Chr08: 7783478-7788555 Phaseolus vulgaris
Phvul.008G080100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 7783478-7784477 Phaseolus vulgaris
Phvul.008G080100 1.0kb downstream 1.0kb downstream 5078 true Chr08: 7784478-7789555 Phaseolus vulgaris
Phvul.008G080100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 7788556-7789555 Phaseolus vulgaris
Phvul.008G080100 2.0kb upstream 2.0kb upstream 6078 true Chr08: 7782478-7788555 Phaseolus vulgaris
Phvul.008G080100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 7782478-7784477 Phaseolus vulgaris
Phvul.008G080100 2.0kb downstream 2.0kb downstream 6078 true Chr08: 7784478-7790555 Phaseolus vulgaris
Phvul.008G080100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 7788556-7790555 Phaseolus vulgaris
Phvul.008G080100 5.0kb upstream 5.0kb upstream 9078 true Chr08: 7779478-7788555 Phaseolus vulgaris
Phvul.008G080100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 7779478-7784477 Phaseolus vulgaris
Phvul.008G080100 5.0kb downstream 5.0kb downstream 9078 true Chr08: 7784478-7793555 Phaseolus vulgaris
Phvul.008G080100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 7788556-7793555 Phaseolus vulgaris
Phvul.008G080100 10.0kb upstream 10.0kb upstream 14078 true Chr08: 7774478-7788555 Phaseolus vulgaris
Phvul.008G080100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 7774478-7784477 Phaseolus vulgaris
Phvul.008G080100 10.0kb downstream 10.0kb downstream 14078 true Chr08: 7784478-7798555 Phaseolus vulgaris
Phvul.008G080100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 7788556-7798555 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301121 5265 Fabidae View MSA
124066812 5270 Rosid View MSA
123740555 5271 Pentapetalae View MSA
122769985 5272 Eudicot View MSA
122044004 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.94691 0.0 23.669   High
cufflinks 5.67391 0.0 17.3727    
cufflinks 5.19493 0.0 18.534    
cufflinks 4.41044 0.0 14.4044    
cufflinks 2.4828 0.0 9.23399    
cufflinks 7.78641 0.0 24.1878   High
cufflinks 3.30854 0.0 11.2168    
cufflinks 1.42247 0.0 5.9128   Low
cufflinks 2.68532 0.0 9.59352    
cufflinks 2.02119 0.0 7.90855   Low
cufflinks 4.02132 0.0 13.2602    

0 Strain