Gene : Phvul.008G185200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11206:SF92 - MATE EFFLUX FAMILY PROTEIN Genomic Order:  1863
Name:  ? Phvul.008G185200 Secondary Identifier:  ? PAC:37157645
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G185200 0.5kb upstream 0.5kb upstream 2698 true Chr08: 52214160-52216857 Phaseolus vulgaris
Phvul.008G185200 0.5kb upstream 0.5kb upstream 500 false Chr08: 52216358-52216857 Phaseolus vulgaris
Phvul.008G185200 0.5kb downstream 0.5kb downstream 2698 true Chr08: 52213660-52216357 Phaseolus vulgaris
Phvul.008G185200 0.5kb downstream 0.5kb downstream 500 false Chr08: 52213660-52214159 Phaseolus vulgaris
Phvul.008G185200 1.0kb upstream 1.0kb upstream 3198 true Chr08: 52214160-52217357 Phaseolus vulgaris
Phvul.008G185200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 52216358-52217357 Phaseolus vulgaris
Phvul.008G185200 1.0kb downstream 1.0kb downstream 3198 true Chr08: 52213160-52216357 Phaseolus vulgaris
Phvul.008G185200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 52213160-52214159 Phaseolus vulgaris
Phvul.008G185200 2.0kb upstream 2.0kb upstream 4198 true Chr08: 52214160-52218357 Phaseolus vulgaris
Phvul.008G185200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 52216358-52218357 Phaseolus vulgaris
Phvul.008G185200 2.0kb downstream 2.0kb downstream 4198 true Chr08: 52212160-52216357 Phaseolus vulgaris
Phvul.008G185200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 52212160-52214159 Phaseolus vulgaris
Phvul.008G185200 5.0kb upstream 5.0kb upstream 7198 true Chr08: 52214160-52221357 Phaseolus vulgaris
Phvul.008G185200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 52216358-52221357 Phaseolus vulgaris
Phvul.008G185200 5.0kb downstream 5.0kb downstream 7198 true Chr08: 52209160-52216357 Phaseolus vulgaris
Phvul.008G185200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 52209160-52214159 Phaseolus vulgaris
Phvul.008G185200 10.0kb upstream 10.0kb upstream 12198 true Chr08: 52214160-52226357 Phaseolus vulgaris
Phvul.008G185200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 52216358-52226357 Phaseolus vulgaris
Phvul.008G185200 10.0kb downstream 10.0kb downstream 12198 true Chr08: 52204160-52216357 Phaseolus vulgaris
Phvul.008G185200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 52204160-52214159 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313961 5265 Fabidae View MSA
124064495 5270 Rosid View MSA
123738593 5271 Pentapetalae View MSA
122792210 5272 Eudicot View MSA
122050809 5273 Angiosperm View MSA
121344541 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.56221 0.0 10.6318   High
cufflinks 0.971481 0.0 3.34874    
cufflinks 0.768842 0.0 2.71476    
cufflinks 6.63563 0.0 18.554   High
cufflinks 3.66708 0.0 10.8917   High
cufflinks 0.144453 0.0 0.58702 Low  
cufflinks 0.0413777 0.0 0.188392 Low Low
cufflinks 0.0152001 0.0 0.0769616 Low Low
cufflinks 0.134443 0.0 0.549338 Low  
cufflinks 0.0485654 0.0 0.217779 Low Low
cufflinks 2.06523 0.0 6.55669    

0 Strain