Gene : Phvul.008G173700 P. vulgaris v2.1
Defline:  (1 of 2) K12118 - cryptochrome 1 (CRY1) Genomic Order:  1748
Name:  ? Phvul.008G173700 Secondary Identifier:  ? PAC:37161008
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G173700 0.5kb upstream 0.5kb upstream 6080 true Chr08: 48967943-48974022 Phaseolus vulgaris
Phvul.008G173700 0.5kb upstream 0.5kb upstream 500 false Chr08: 48967943-48968442 Phaseolus vulgaris
Phvul.008G173700 0.5kb downstream 0.5kb downstream 6080 true Chr08: 48968443-48974522 Phaseolus vulgaris
Phvul.008G173700 0.5kb downstream 0.5kb downstream 500 false Chr08: 48974023-48974522 Phaseolus vulgaris
Phvul.008G173700 1.0kb upstream 1.0kb upstream 6580 true Chr08: 48967443-48974022 Phaseolus vulgaris
Phvul.008G173700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 48967443-48968442 Phaseolus vulgaris
Phvul.008G173700 1.0kb downstream 1.0kb downstream 6580 true Chr08: 48968443-48975022 Phaseolus vulgaris
Phvul.008G173700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 48974023-48975022 Phaseolus vulgaris
Phvul.008G173700 2.0kb upstream 2.0kb upstream 7580 true Chr08: 48966443-48974022 Phaseolus vulgaris
Phvul.008G173700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 48966443-48968442 Phaseolus vulgaris
Phvul.008G173700 2.0kb downstream 2.0kb downstream 7580 true Chr08: 48968443-48976022 Phaseolus vulgaris
Phvul.008G173700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 48974023-48976022 Phaseolus vulgaris
Phvul.008G173700 5.0kb upstream 5.0kb upstream 10580 true Chr08: 48963443-48974022 Phaseolus vulgaris
Phvul.008G173700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 48963443-48968442 Phaseolus vulgaris
Phvul.008G173700 5.0kb downstream 5.0kb downstream 10580 true Chr08: 48968443-48979022 Phaseolus vulgaris
Phvul.008G173700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 48974023-48979022 Phaseolus vulgaris
Phvul.008G173700 10.0kb upstream 10.0kb upstream 15580 true Chr08: 48958443-48974022 Phaseolus vulgaris
Phvul.008G173700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 48958443-48968442 Phaseolus vulgaris
Phvul.008G173700 10.0kb downstream 10.0kb downstream 15580 true Chr08: 48968443-48984022 Phaseolus vulgaris
Phvul.008G173700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 48974023-48984022 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314673 5265 Fabidae View MSA
124068248 5270 Rosid View MSA
123736970 5271 Pentapetalae View MSA
122788964 5272 Eudicot View MSA
122048329 5273 Angiosperm View MSA
121343845 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.02666 0.0 15.9372    
cufflinks 10.3272 0.0 26.7213    
cufflinks 41.8649 0.0 116.371 High High
cufflinks 5.42199 0.0 14.524    
cufflinks 25.2398 0.0 66.7259    
cufflinks 33.902 0.0 92.2248 High High
cufflinks 6.71604 0.0 17.6061    
cufflinks 5.18723 0.0 13.7979   Low
cufflinks 5.07605 0.0 13.5681   Low
cufflinks 22.6881 0.0 59.6653    
cufflinks 22.7629 0.0 59.8446    

0 Strain