Gene : Phvul.008G153300 P. vulgaris v2.1
Defline:  (1 of 3) PTHR30620:SF8 - BETA-D-XYLOSIDASE 7-RELATED Genomic Order:  1480
Name:  ? Phvul.008G153300 Secondary Identifier:  ? PAC:37161193
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G153300 0.5kb upstream 0.5kb upstream 5390 true Chr08: 32719014-32724403 Phaseolus vulgaris
Phvul.008G153300 0.5kb upstream 0.5kb upstream 500 false Chr08: 32719014-32719513 Phaseolus vulgaris
Phvul.008G153300 0.5kb downstream 0.5kb downstream 5390 true Chr08: 32719514-32724903 Phaseolus vulgaris
Phvul.008G153300 0.5kb downstream 0.5kb downstream 500 false Chr08: 32724404-32724903 Phaseolus vulgaris
Phvul.008G153300 1.0kb upstream 1.0kb upstream 5890 true Chr08: 32718514-32724403 Phaseolus vulgaris
Phvul.008G153300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 32718514-32719513 Phaseolus vulgaris
Phvul.008G153300 1.0kb downstream 1.0kb downstream 5890 true Chr08: 32719514-32725403 Phaseolus vulgaris
Phvul.008G153300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 32724404-32725403 Phaseolus vulgaris
Phvul.008G153300 2.0kb upstream 2.0kb upstream 6890 true Chr08: 32717514-32724403 Phaseolus vulgaris
Phvul.008G153300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 32717514-32719513 Phaseolus vulgaris
Phvul.008G153300 2.0kb downstream 2.0kb downstream 6890 true Chr08: 32719514-32726403 Phaseolus vulgaris
Phvul.008G153300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 32724404-32726403 Phaseolus vulgaris
Phvul.008G153300 5.0kb upstream 5.0kb upstream 9890 true Chr08: 32714514-32724403 Phaseolus vulgaris
Phvul.008G153300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 32714514-32719513 Phaseolus vulgaris
Phvul.008G153300 5.0kb downstream 5.0kb downstream 9890 true Chr08: 32719514-32729403 Phaseolus vulgaris
Phvul.008G153300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 32724404-32729403 Phaseolus vulgaris
Phvul.008G153300 10.0kb upstream 10.0kb upstream 14890 true Chr08: 32709514-32724403 Phaseolus vulgaris
Phvul.008G153300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 32709514-32719513 Phaseolus vulgaris
Phvul.008G153300 10.0kb downstream 10.0kb downstream 14890 true Chr08: 32719514-32734403 Phaseolus vulgaris
Phvul.008G153300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 32724404-32734403 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309781 5265 Fabidae View MSA
124074265 5270 Rosid View MSA
123741935 5271 Pentapetalae View MSA
122794442 5272 Eudicot View MSA
122048510 5273 Angiosperm View MSA
121349595 5274 Embryophyte View MSA
123381370 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.28627 0.0 9.22989   Low
cufflinks 22.798 0.0 59.6021    
cufflinks 12.5778 0.0 32.5279    
cufflinks 23.9793 0.0 62.7879    
cufflinks 37.6997 0.0 101.987 High High
cufflinks 23.2366 0.0 60.8036    
cufflinks 9.38401 0.0 24.3765    
cufflinks 7.01483 0.0 18.4914    
cufflinks 10.5381 0.0 27.3039    
cufflinks 10.2073 0.0 26.5077    
cufflinks 36.2055 0.0 97.6974 High High

0 Strain