Gene : Phvul.008G268900 P. vulgaris v2.1
Defline:  (1 of 1) K08741 - DNA mismatch repair protein MSH5 (MSH5) Genomic Order:  2702
Name:  ? Phvul.008G268900 Secondary Identifier:  ? PAC:37159208
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G268900 0.5kb upstream 0.5kb upstream 11463 true Chr08: 61362665-61374127 Phaseolus vulgaris
Phvul.008G268900 0.5kb upstream 0.5kb upstream 500 false Chr08: 61373628-61374127 Phaseolus vulgaris
Phvul.008G268900 0.5kb downstream 0.5kb downstream 11463 true Chr08: 61362165-61373627 Phaseolus vulgaris
Phvul.008G268900 0.5kb downstream 0.5kb downstream 500 false Chr08: 61362165-61362664 Phaseolus vulgaris
Phvul.008G268900 1.0kb upstream 1.0kb upstream 11963 true Chr08: 61362665-61374627 Phaseolus vulgaris
Phvul.008G268900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 61373628-61374627 Phaseolus vulgaris
Phvul.008G268900 1.0kb downstream 1.0kb downstream 11963 true Chr08: 61361665-61373627 Phaseolus vulgaris
Phvul.008G268900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61361665-61362664 Phaseolus vulgaris
Phvul.008G268900 2.0kb upstream 2.0kb upstream 12963 true Chr08: 61362665-61375627 Phaseolus vulgaris
Phvul.008G268900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 61373628-61375627 Phaseolus vulgaris
Phvul.008G268900 2.0kb downstream 2.0kb downstream 12963 true Chr08: 61360665-61373627 Phaseolus vulgaris
Phvul.008G268900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61360665-61362664 Phaseolus vulgaris
Phvul.008G268900 5.0kb upstream 5.0kb upstream 15963 true Chr08: 61362665-61378627 Phaseolus vulgaris
Phvul.008G268900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 61373628-61378627 Phaseolus vulgaris
Phvul.008G268900 5.0kb downstream 5.0kb downstream 15963 true Chr08: 61357665-61373627 Phaseolus vulgaris
Phvul.008G268900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61357665-61362664 Phaseolus vulgaris
Phvul.008G268900 10.0kb upstream 10.0kb upstream 20963 true Chr08: 61362665-61383627 Phaseolus vulgaris
Phvul.008G268900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 61373628-61383627 Phaseolus vulgaris
Phvul.008G268900 10.0kb downstream 10.0kb downstream 20963 true Chr08: 61352665-61373627 Phaseolus vulgaris
Phvul.008G268900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61352665-61362664 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303774 5265 Fabidae View MSA
124066874 5270 Rosid View MSA
123749181 5271 Pentapetalae View MSA
122792549 5272 Eudicot View MSA
122042085 5273 Angiosperm View MSA
121347991 5274 Embryophyte View MSA
123423769 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.062881 0.0 0.280565 Low Low
cufflinks 0.184017 0.0 1.84735 Low  
cufflinks 0.427411 0.0 2.93257 Low  
cufflinks 0.129288 0.0 0.541885 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.439462 0.0 3.84883 Low  
cufflinks 0.524338 0.0 5.27392 Low  
cufflinks 1.59141 0.0 10.6352   High
cufflinks 0.041924 0.0 0.198593 Low Low
cufflinks 0.0699417 0.0 0.308626 Low  
cufflinks 0.182208 0.0 0.741613 Low  

0 Strain