Gene : Phvul.008G268200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12001//PTHR12001:SF57 - GERANYLGERANYL PYROPHOSPHATE SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  2695
Name:  ? Phvul.008G268200 Secondary Identifier:  ? PAC:37158865
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G268200 0.5kb upstream 0.5kb upstream 1325 true Chr08: 61310030-61311354 Phaseolus vulgaris
Phvul.008G268200 0.5kb upstream 0.5kb upstream 500 false Chr08: 61310855-61311354 Phaseolus vulgaris
Phvul.008G268200 0.5kb downstream 0.5kb downstream 1325 true Chr08: 61309530-61310854 Phaseolus vulgaris
Phvul.008G268200 0.5kb downstream 0.5kb downstream 500 false Chr08: 61309530-61310029 Phaseolus vulgaris
Phvul.008G268200 1.0kb upstream 1.0kb upstream 1825 true Chr08: 61310030-61311854 Phaseolus vulgaris
Phvul.008G268200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 61310855-61311854 Phaseolus vulgaris
Phvul.008G268200 1.0kb downstream 1.0kb downstream 1825 true Chr08: 61309030-61310854 Phaseolus vulgaris
Phvul.008G268200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61309030-61310029 Phaseolus vulgaris
Phvul.008G268200 2.0kb upstream 2.0kb upstream 2825 true Chr08: 61310030-61312854 Phaseolus vulgaris
Phvul.008G268200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 61310855-61312854 Phaseolus vulgaris
Phvul.008G268200 2.0kb downstream 2.0kb downstream 2825 true Chr08: 61308030-61310854 Phaseolus vulgaris
Phvul.008G268200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61308030-61310029 Phaseolus vulgaris
Phvul.008G268200 5.0kb upstream 5.0kb upstream 5825 true Chr08: 61310030-61315854 Phaseolus vulgaris
Phvul.008G268200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 61310855-61315854 Phaseolus vulgaris
Phvul.008G268200 5.0kb downstream 5.0kb downstream 5825 true Chr08: 61305030-61310854 Phaseolus vulgaris
Phvul.008G268200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61305030-61310029 Phaseolus vulgaris
Phvul.008G268200 10.0kb upstream 10.0kb upstream 10825 true Chr08: 61310030-61320854 Phaseolus vulgaris
Phvul.008G268200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 61310855-61320854 Phaseolus vulgaris
Phvul.008G268200 10.0kb downstream 10.0kb downstream 10825 true Chr08: 61300030-61310854 Phaseolus vulgaris
Phvul.008G268200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61300030-61310029 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792206 5273 Angiosperm View MSA
122305785 5265 Fabidae View MSA
124070417 5270 Rosid View MSA
123742390 5271 Pentapetalae View MSA
122796955 5272 Eudicot View MSA
121063452 5274 Embryophyte View MSA
123103200 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.4432 0.0 64.1875    
cufflinks 4.88709 0.0 14.9488    
cufflinks 0.374748 0.0 1.48734 Low  
cufflinks 570.527 0.0 1989.41 High High
cufflinks 6.68328 0.0 19.4695    
cufflinks 2.47846 0.0 8.21265    
cufflinks 1.77289 0.0 5.99411    
cufflinks 2.68074 0.0 8.79038    
cufflinks 0.210199 0.0 0.85888 Low Low
cufflinks 0.0488617 0.0 0.230846 Low Low
cufflinks 5.94967 0.0 17.5056    

0 Strain