Gene : Phvul.008G233300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR30544:SF6 - RADICAL SAM DOMAIN-CONTAINING PROTEIN Genomic Order:  1944
Name:  ? Phvul.008G233300 Secondary Identifier:  ? PAC:37158076
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G233300 0.5kb upstream 0.5kb upstream 8687 true Chr08: 53391758-53400444 Phaseolus vulgaris
Phvul.008G233300 0.5kb upstream 0.5kb upstream 500 false Chr08: 53391758-53392257 Phaseolus vulgaris
Phvul.008G233300 0.5kb downstream 0.5kb downstream 8687 true Chr08: 53392258-53400944 Phaseolus vulgaris
Phvul.008G233300 0.5kb downstream 0.5kb downstream 500 false Chr08: 53400445-53400944 Phaseolus vulgaris
Phvul.008G233300 1.0kb upstream 1.0kb upstream 9187 true Chr08: 53391258-53400444 Phaseolus vulgaris
Phvul.008G233300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 53391258-53392257 Phaseolus vulgaris
Phvul.008G233300 1.0kb downstream 1.0kb downstream 9187 true Chr08: 53392258-53401444 Phaseolus vulgaris
Phvul.008G233300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 53400445-53401444 Phaseolus vulgaris
Phvul.008G233300 2.0kb upstream 2.0kb upstream 10187 true Chr08: 53390258-53400444 Phaseolus vulgaris
Phvul.008G233300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 53390258-53392257 Phaseolus vulgaris
Phvul.008G233300 2.0kb downstream 2.0kb downstream 10187 true Chr08: 53392258-53402444 Phaseolus vulgaris
Phvul.008G233300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 53400445-53402444 Phaseolus vulgaris
Phvul.008G233300 5.0kb upstream 5.0kb upstream 13187 true Chr08: 53387258-53400444 Phaseolus vulgaris
Phvul.008G233300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 53387258-53392257 Phaseolus vulgaris
Phvul.008G233300 5.0kb downstream 5.0kb downstream 13187 true Chr08: 53392258-53405444 Phaseolus vulgaris
Phvul.008G233300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 53400445-53405444 Phaseolus vulgaris
Phvul.008G233300 10.0kb upstream 10.0kb upstream 18187 true Chr08: 53382258-53400444 Phaseolus vulgaris
Phvul.008G233300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 53382258-53392257 Phaseolus vulgaris
Phvul.008G233300 10.0kb downstream 10.0kb downstream 18187 true Chr08: 53392258-53410444 Phaseolus vulgaris
Phvul.008G233300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 53400445-53410444 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305282 5265 Fabidae View MSA
124061509 5270 Rosid View MSA
123743961 5271 Pentapetalae View MSA
122788034 5272 Eudicot View MSA
122048523 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121344688 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.52834 0.0 15.7025    
cufflinks 8.00443 0.0 21.9852   High
cufflinks 8.11572 0.0 22.2319   High
cufflinks 5.32378 0.0 15.2682    
cufflinks 4.21689 0.0 12.3864    
cufflinks 8.95232 0.0 24.3612   High
cufflinks 3.0277 0.0 9.18833   Low
cufflinks 4.50064 0.0 13.0082    
cufflinks 2.49646 0.0 7.76492   Low
cufflinks 7.22451 0.0 20.0455    
cufflinks 3.75642 0.0 11.1553    

0 Strain