Gene : Phvul.008G225300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22950//PTHR22950:SF260 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Genomic Order:  2292
Name:  ? Phvul.008G225300 Secondary Identifier:  ? PAC:37160317
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G225300 0.5kb upstream 0.5kb upstream 5404 true Chr08: 57513242-57518645 Phaseolus vulgaris
Phvul.008G225300 0.5kb upstream 0.5kb upstream 500 false Chr08: 57518146-57518645 Phaseolus vulgaris
Phvul.008G225300 0.5kb downstream 0.5kb downstream 5404 true Chr08: 57512742-57518145 Phaseolus vulgaris
Phvul.008G225300 0.5kb downstream 0.5kb downstream 500 false Chr08: 57512742-57513241 Phaseolus vulgaris
Phvul.008G225300 1.0kb upstream 1.0kb upstream 5904 true Chr08: 57513242-57519145 Phaseolus vulgaris
Phvul.008G225300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 57518146-57519145 Phaseolus vulgaris
Phvul.008G225300 1.0kb downstream 1.0kb downstream 5904 true Chr08: 57512242-57518145 Phaseolus vulgaris
Phvul.008G225300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 57512242-57513241 Phaseolus vulgaris
Phvul.008G225300 2.0kb upstream 2.0kb upstream 6904 true Chr08: 57513242-57520145 Phaseolus vulgaris
Phvul.008G225300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 57518146-57520145 Phaseolus vulgaris
Phvul.008G225300 2.0kb downstream 2.0kb downstream 6904 true Chr08: 57511242-57518145 Phaseolus vulgaris
Phvul.008G225300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 57511242-57513241 Phaseolus vulgaris
Phvul.008G225300 5.0kb upstream 5.0kb upstream 9904 true Chr08: 57513242-57523145 Phaseolus vulgaris
Phvul.008G225300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 57518146-57523145 Phaseolus vulgaris
Phvul.008G225300 5.0kb downstream 5.0kb downstream 9904 true Chr08: 57508242-57518145 Phaseolus vulgaris
Phvul.008G225300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 57508242-57513241 Phaseolus vulgaris
Phvul.008G225300 10.0kb upstream 10.0kb upstream 14904 true Chr08: 57513242-57528145 Phaseolus vulgaris
Phvul.008G225300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 57518146-57528145 Phaseolus vulgaris
Phvul.008G225300 10.0kb downstream 10.0kb downstream 14904 true Chr08: 57503242-57518145 Phaseolus vulgaris
Phvul.008G225300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 57503242-57513241 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314633 5265 Fabidae View MSA
124073275 5270 Rosid View MSA
123753033 5271 Pentapetalae View MSA
122796609 5272 Eudicot View MSA
122045744 5273 Angiosperm View MSA
121347395 5274 Embryophyte View MSA
123427582 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.2312 0.0 65.2677    
cufflinks 27.9852 0.0 72.5248    
cufflinks 1.8392 0.0 5.76339   Low
cufflinks 5.10737 0.0 14.4031    
cufflinks 31.6678 0.0 82.356    
cufflinks 4.0181 0.0 11.5738   Low
cufflinks 26.9376 0.0 69.7562    
cufflinks 8.99931 0.0 24.0706    
cufflinks 24.6666 0.0 63.7854    
cufflinks 62.6134 0.0 170.291 High High
cufflinks 34.1074 0.0 88.8415 High  

0 Strain