Gene : Phvul.008G224300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33469:SF5 - PROTEIN EARLY FLOWERING 4 Genomic Order:  2282
Name:  ? Phvul.008G224300 Secondary Identifier:  ? PAC:37159659
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G224300 0.5kb upstream 0.5kb upstream 1142 true Chr08: 57428511-57429652 Phaseolus vulgaris
Phvul.008G224300 0.5kb upstream 0.5kb upstream 500 false Chr08: 57429153-57429652 Phaseolus vulgaris
Phvul.008G224300 0.5kb downstream 0.5kb downstream 1142 true Chr08: 57428011-57429152 Phaseolus vulgaris
Phvul.008G224300 0.5kb downstream 0.5kb downstream 500 false Chr08: 57428011-57428510 Phaseolus vulgaris
Phvul.008G224300 1.0kb upstream 1.0kb upstream 1642 true Chr08: 57428511-57430152 Phaseolus vulgaris
Phvul.008G224300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 57429153-57430152 Phaseolus vulgaris
Phvul.008G224300 1.0kb downstream 1.0kb downstream 1642 true Chr08: 57427511-57429152 Phaseolus vulgaris
Phvul.008G224300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 57427511-57428510 Phaseolus vulgaris
Phvul.008G224300 2.0kb upstream 2.0kb upstream 2642 true Chr08: 57428511-57431152 Phaseolus vulgaris
Phvul.008G224300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 57429153-57431152 Phaseolus vulgaris
Phvul.008G224300 2.0kb downstream 2.0kb downstream 2642 true Chr08: 57426511-57429152 Phaseolus vulgaris
Phvul.008G224300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 57426511-57428510 Phaseolus vulgaris
Phvul.008G224300 5.0kb upstream 5.0kb upstream 5642 true Chr08: 57428511-57434152 Phaseolus vulgaris
Phvul.008G224300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 57429153-57434152 Phaseolus vulgaris
Phvul.008G224300 5.0kb downstream 5.0kb downstream 5642 true Chr08: 57423511-57429152 Phaseolus vulgaris
Phvul.008G224300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 57423511-57428510 Phaseolus vulgaris
Phvul.008G224300 10.0kb upstream 10.0kb upstream 10642 true Chr08: 57428511-57439152 Phaseolus vulgaris
Phvul.008G224300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 57429153-57439152 Phaseolus vulgaris
Phvul.008G224300 10.0kb downstream 10.0kb downstream 10642 true Chr08: 57418511-57429152 Phaseolus vulgaris
Phvul.008G224300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 57418511-57428510 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313521 5265 Fabidae View MSA
124074013 5270 Rosid View MSA
123741111 5271 Pentapetalae View MSA
122795202 5272 Eudicot View MSA
122041795 5273 Angiosperm View MSA
121309889 5274 Embryophyte View MSA
123347525 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.6039 0.0 39.8099    
cufflinks 5.43544 0.0 17.6867   Low
cufflinks 11.2553 0.0 34.0459    
cufflinks 8.78696 0.0 26.6175    
cufflinks 18.1233 0.0 51.3939   High
cufflinks 5.90087 0.0 19.0909   Low
cufflinks 6.32652 0.0 20.1088    
cufflinks 10.0776 0.0 30.7701    
cufflinks 7.22008 0.0 22.5052    
cufflinks 8.0288 0.0 25.0436    
cufflinks 14.3992 0.0 41.6486   High

0 Strain