Gene : Phvul.008G196900 P. vulgaris v2.1
Defline:  (1 of 5) K17839 - polyamine oxidase (PAO4, PAO3, PAO2) Genomic Order:  2007
Name:  ? Phvul.008G196900 Secondary Identifier:  ? PAC:37161421
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6441 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G196900 0.5kb upstream 0.5kb upstream 5140 true Chr08: 54127937-54133076 Phaseolus vulgaris
Phvul.008G196900 0.5kb upstream 0.5kb upstream 500 false Chr08: 54127937-54128436 Phaseolus vulgaris
Phvul.008G196900 0.5kb downstream 0.5kb downstream 5140 true Chr08: 54128437-54133576 Phaseolus vulgaris
Phvul.008G196900 0.5kb downstream 0.5kb downstream 500 false Chr08: 54133077-54133576 Phaseolus vulgaris
Phvul.008G196900 1.0kb upstream 1.0kb upstream 5640 true Chr08: 54127437-54133076 Phaseolus vulgaris
Phvul.008G196900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54127437-54128436 Phaseolus vulgaris
Phvul.008G196900 1.0kb downstream 1.0kb downstream 5640 true Chr08: 54128437-54134076 Phaseolus vulgaris
Phvul.008G196900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54133077-54134076 Phaseolus vulgaris
Phvul.008G196900 2.0kb upstream 2.0kb upstream 6640 true Chr08: 54126437-54133076 Phaseolus vulgaris
Phvul.008G196900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54126437-54128436 Phaseolus vulgaris
Phvul.008G196900 2.0kb downstream 2.0kb downstream 6640 true Chr08: 54128437-54135076 Phaseolus vulgaris
Phvul.008G196900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54133077-54135076 Phaseolus vulgaris
Phvul.008G196900 5.0kb upstream 5.0kb upstream 9640 true Chr08: 54123437-54133076 Phaseolus vulgaris
Phvul.008G196900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54123437-54128436 Phaseolus vulgaris
Phvul.008G196900 5.0kb downstream 5.0kb downstream 9640 true Chr08: 54128437-54138076 Phaseolus vulgaris
Phvul.008G196900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54133077-54138076 Phaseolus vulgaris
Phvul.008G196900 10.0kb upstream 10.0kb upstream 14640 true Chr08: 54118437-54133076 Phaseolus vulgaris
Phvul.008G196900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54118437-54128436 Phaseolus vulgaris
Phvul.008G196900 10.0kb downstream 10.0kb downstream 14640 true Chr08: 54128437-54143076 Phaseolus vulgaris
Phvul.008G196900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54133077-54143076 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310798 5265 Fabidae View MSA
124065173 5270 Rosid View MSA
123745734 5271 Pentapetalae View MSA
122788869 5272 Eudicot View MSA
122044597 5273 Angiosperm View MSA
121345919 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.4938 0.0 74.0083    
cufflinks 18.8796 0.0 48.8343   Low
cufflinks 51.9169 0.0 139.612 High High
cufflinks 19.9833 0.0 51.6867    
cufflinks 34.1791 0.0 89.1342 High  
cufflinks 20.7177 0.0 53.5529    
cufflinks 24.0273 0.0 62.1386    
cufflinks 21.6793 0.0 56.0397    
cufflinks 27.2735 0.0 70.6377    
cufflinks 19.9184 0.0 51.4992    
cufflinks 31.4439 0.0 81.7489    

0 Strain