Gene : Phvul.008G200300 P. vulgaris v2.1
Defline:  (1 of 3) PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED Genomic Order:  2042
Name:  ? Phvul.008G200300 Secondary Identifier:  ? PAC:37159316
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G200300 0.5kb upstream 0.5kb upstream 8734 true Chr08: 54598011-54606744 Phaseolus vulgaris
Phvul.008G200300 0.5kb upstream 0.5kb upstream 500 false Chr08: 54606245-54606744 Phaseolus vulgaris
Phvul.008G200300 0.5kb downstream 0.5kb downstream 8734 true Chr08: 54597511-54606244 Phaseolus vulgaris
Phvul.008G200300 0.5kb downstream 0.5kb downstream 500 false Chr08: 54597511-54598010 Phaseolus vulgaris
Phvul.008G200300 1.0kb upstream 1.0kb upstream 9234 true Chr08: 54598011-54607244 Phaseolus vulgaris
Phvul.008G200300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54606245-54607244 Phaseolus vulgaris
Phvul.008G200300 1.0kb downstream 1.0kb downstream 9234 true Chr08: 54597011-54606244 Phaseolus vulgaris
Phvul.008G200300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 54597011-54598010 Phaseolus vulgaris
Phvul.008G200300 2.0kb upstream 2.0kb upstream 10234 true Chr08: 54598011-54608244 Phaseolus vulgaris
Phvul.008G200300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54606245-54608244 Phaseolus vulgaris
Phvul.008G200300 2.0kb downstream 2.0kb downstream 10234 true Chr08: 54596011-54606244 Phaseolus vulgaris
Phvul.008G200300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 54596011-54598010 Phaseolus vulgaris
Phvul.008G200300 5.0kb upstream 5.0kb upstream 13234 true Chr08: 54598011-54611244 Phaseolus vulgaris
Phvul.008G200300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54606245-54611244 Phaseolus vulgaris
Phvul.008G200300 5.0kb downstream 5.0kb downstream 13234 true Chr08: 54593011-54606244 Phaseolus vulgaris
Phvul.008G200300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 54593011-54598010 Phaseolus vulgaris
Phvul.008G200300 10.0kb upstream 10.0kb upstream 18234 true Chr08: 54598011-54616244 Phaseolus vulgaris
Phvul.008G200300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54606245-54616244 Phaseolus vulgaris
Phvul.008G200300 10.0kb downstream 10.0kb downstream 18234 true Chr08: 54588011-54606244 Phaseolus vulgaris
Phvul.008G200300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 54588011-54598010 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307659 5265 Fabidae View MSA
124062866 5270 Rosid View MSA
123743329 5271 Pentapetalae View MSA
122789808 5272 Eudicot View MSA
122045930 5273 Angiosperm View MSA
121350863 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.73239 0.0 15.9884   Low
cufflinks 13.8769 0.0 44.8407    
cufflinks 11.1428 0.0 35.6433    
cufflinks 10.8428 0.0 34.6639    
cufflinks 15.1508 0.0 49.1092    
cufflinks 20.4409 0.0 69.5544   High
cufflinks 14.3965 0.0 46.8207    
cufflinks 10.2514 0.0 32.7358    
cufflinks 13.1747 0.0 42.4156    
cufflinks 19.7026 0.0 66.5867   High
cufflinks 15.088 0.0 49.0224    

0 Strain