Gene : Phvul.008G291900 P. vulgaris v2.1
Defline:  (1 of 2) K12385 - Niemann-Pick C1 protein (NPC1) Genomic Order:  2937
Name:  ? Phvul.008G291900 Secondary Identifier:  ? PAC:37158261
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G291900 0.5kb upstream 0.5kb upstream 21802 true Chr08: 62909203-62931004 Phaseolus vulgaris
Phvul.008G291900 0.5kb upstream 0.5kb upstream 500 false Chr08: 62930505-62931004 Phaseolus vulgaris
Phvul.008G291900 0.5kb downstream 0.5kb downstream 21802 true Chr08: 62908703-62930504 Phaseolus vulgaris
Phvul.008G291900 0.5kb downstream 0.5kb downstream 500 false Chr08: 62908703-62909202 Phaseolus vulgaris
Phvul.008G291900 1.0kb upstream 1.0kb upstream 22302 true Chr08: 62909203-62931504 Phaseolus vulgaris
Phvul.008G291900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62930505-62931504 Phaseolus vulgaris
Phvul.008G291900 1.0kb downstream 1.0kb downstream 22302 true Chr08: 62908203-62930504 Phaseolus vulgaris
Phvul.008G291900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62908203-62909202 Phaseolus vulgaris
Phvul.008G291900 2.0kb upstream 2.0kb upstream 23302 true Chr08: 62909203-62932504 Phaseolus vulgaris
Phvul.008G291900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62930505-62932504 Phaseolus vulgaris
Phvul.008G291900 2.0kb downstream 2.0kb downstream 23302 true Chr08: 62907203-62930504 Phaseolus vulgaris
Phvul.008G291900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62907203-62909202 Phaseolus vulgaris
Phvul.008G291900 5.0kb upstream 5.0kb upstream 26302 true Chr08: 62909203-62935504 Phaseolus vulgaris
Phvul.008G291900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62930505-62935504 Phaseolus vulgaris
Phvul.008G291900 5.0kb downstream 5.0kb downstream 26302 true Chr08: 62904203-62930504 Phaseolus vulgaris
Phvul.008G291900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62904203-62909202 Phaseolus vulgaris
Phvul.008G291900 10.0kb upstream 10.0kb upstream 31302 true Chr08: 62909203-62940504 Phaseolus vulgaris
Phvul.008G291900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62930505-62940504 Phaseolus vulgaris
Phvul.008G291900 10.0kb downstream 10.0kb downstream 31302 true Chr08: 62899203-62930504 Phaseolus vulgaris
Phvul.008G291900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62899203-62909202 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312597 5265 Fabidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.67385 0.0 22.4895    
cufflinks 10.8485 0.0 28.0439    
cufflinks 8.45433 0.0 21.918    
cufflinks 6.71277 0.0 17.6438   Low
cufflinks 6.51998 0.0 17.1461   Low
cufflinks 11.2307 0.0 29.0294    
cufflinks 12.78 0.0 33.0442    
cufflinks 16.9426 0.0 44.1456   High
cufflinks 15.4223 0.0 39.9696   High
cufflinks 17.722 0.0 46.242   High
cufflinks 6.74998 0.0 17.7093   Low

0 Strain