Gene : Phvul.L004046 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10794:SF53 - CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN Genomic Order:  25
Name:  ? Phvul.L004046 Secondary Identifier:  ? PAC:37174291
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L004046 0.5kb upstream 0.5kb upstream 7492 true scaffold_17: 568004-575495 Phaseolus vulgaris
Phvul.L004046 0.5kb upstream 0.5kb upstream 500 false scaffold_17: 568004-568503 Phaseolus vulgaris
Phvul.L004046 0.5kb downstream 0.5kb downstream 7492 true scaffold_17: 568504-575995 Phaseolus vulgaris
Phvul.L004046 0.5kb downstream 0.5kb downstream 500 false scaffold_17: 575496-575995 Phaseolus vulgaris
Phvul.L004046 1.0kb upstream 1.0kb upstream 7992 true scaffold_17: 567504-575495 Phaseolus vulgaris
Phvul.L004046 1.0kb upstream 1.0kb upstream 1000 false scaffold_17: 567504-568503 Phaseolus vulgaris
Phvul.L004046 1.0kb downstream 1.0kb downstream 7992 true scaffold_17: 568504-576495 Phaseolus vulgaris
Phvul.L004046 1.0kb downstream 1.0kb downstream 1000 false scaffold_17: 575496-576495 Phaseolus vulgaris
Phvul.L004046 2.0kb upstream 2.0kb upstream 8992 true scaffold_17: 566504-575495 Phaseolus vulgaris
Phvul.L004046 2.0kb upstream 2.0kb upstream 2000 false scaffold_17: 566504-568503 Phaseolus vulgaris
Phvul.L004046 2.0kb downstream 2.0kb downstream 8992 true scaffold_17: 568504-577495 Phaseolus vulgaris
Phvul.L004046 2.0kb downstream 2.0kb downstream 2000 false scaffold_17: 575496-577495 Phaseolus vulgaris
Phvul.L004046 5.0kb upstream 5.0kb upstream 11992 true scaffold_17: 563504-575495 Phaseolus vulgaris
Phvul.L004046 5.0kb upstream 5.0kb upstream 5000 false scaffold_17: 563504-568503 Phaseolus vulgaris
Phvul.L004046 5.0kb downstream 5.0kb downstream 11992 true scaffold_17: 568504-580495 Phaseolus vulgaris
Phvul.L004046 5.0kb downstream 5.0kb downstream 5000 false scaffold_17: 575496-580495 Phaseolus vulgaris
Phvul.L004046 10.0kb upstream 10.0kb upstream 16992 true scaffold_17: 558504-575495 Phaseolus vulgaris
Phvul.L004046 10.0kb upstream 10.0kb upstream 10000 false scaffold_17: 558504-568503 Phaseolus vulgaris
Phvul.L004046 10.0kb downstream 10.0kb downstream 16992 true scaffold_17: 568504-585495 Phaseolus vulgaris
Phvul.L004046 10.0kb downstream 10.0kb downstream 10000 false scaffold_17: 575496-585495 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305816 5265 Fabidae View MSA
124063785 5270 Rosid View MSA
123740423 5271 Pentapetalae View MSA
122790684 5272 Eudicot View MSA
122042712 5273 Angiosperm View MSA
121349023 5274 Embryophyte View MSA
123428279 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.88318 0.0 24.8696    
cufflinks 8.49994 0.0 23.94    
cufflinks 40.6071 0.0 105.045 High High
cufflinks 7.2444 0.0 20.7765    
cufflinks 6.71485 0.0 19.3862    
cufflinks 22.4473 0.0 58.6564   High
cufflinks 2.18985 0.0 7.19052   Low
cufflinks 3.32766 0.0 10.403    
cufflinks 2.46711 0.0 8.01838   Low
cufflinks 7.57718 0.0 21.5879    
cufflinks 4.52293 0.0 13.714    

0 Strain