Gene : Phvul.008G289900 P. vulgaris v2.1
Defline:  (1 of 1) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  2917
Name:  ? Phvul.008G289900 Secondary Identifier:  ? PAC:37159396
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CHLOROPHYLL-SYN Phaseolus vulgaris pathologic  
Pvulgaris HEME-BIOSYNTHESIS-II Phaseolus vulgaris pathologic  
Pvulgaris PWY-5918 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G289900 0.5kb upstream 0.5kb upstream 4057 true Chr08: 62802664-62806720 Phaseolus vulgaris
Phvul.008G289900 0.5kb upstream 0.5kb upstream 500 false Chr08: 62802664-62803163 Phaseolus vulgaris
Phvul.008G289900 0.5kb downstream 0.5kb downstream 4057 true Chr08: 62803164-62807220 Phaseolus vulgaris
Phvul.008G289900 0.5kb downstream 0.5kb downstream 500 false Chr08: 62806721-62807220 Phaseolus vulgaris
Phvul.008G289900 1.0kb upstream 1.0kb upstream 4557 true Chr08: 62802164-62806720 Phaseolus vulgaris
Phvul.008G289900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62802164-62803163 Phaseolus vulgaris
Phvul.008G289900 1.0kb downstream 1.0kb downstream 4557 true Chr08: 62803164-62807720 Phaseolus vulgaris
Phvul.008G289900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62806721-62807720 Phaseolus vulgaris
Phvul.008G289900 2.0kb upstream 2.0kb upstream 5557 true Chr08: 62801164-62806720 Phaseolus vulgaris
Phvul.008G289900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62801164-62803163 Phaseolus vulgaris
Phvul.008G289900 2.0kb downstream 2.0kb downstream 5557 true Chr08: 62803164-62808720 Phaseolus vulgaris
Phvul.008G289900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62806721-62808720 Phaseolus vulgaris
Phvul.008G289900 5.0kb upstream 5.0kb upstream 8557 true Chr08: 62798164-62806720 Phaseolus vulgaris
Phvul.008G289900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62798164-62803163 Phaseolus vulgaris
Phvul.008G289900 5.0kb downstream 5.0kb downstream 8557 true Chr08: 62803164-62811720 Phaseolus vulgaris
Phvul.008G289900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62806721-62811720 Phaseolus vulgaris
Phvul.008G289900 10.0kb upstream 10.0kb upstream 13557 true Chr08: 62793164-62806720 Phaseolus vulgaris
Phvul.008G289900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62793164-62803163 Phaseolus vulgaris
Phvul.008G289900 10.0kb downstream 10.0kb downstream 13557 true Chr08: 62803164-62816720 Phaseolus vulgaris
Phvul.008G289900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62806721-62816720 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308564 5265 Fabidae View MSA
124062707 5270 Rosid View MSA
123737615 5271 Pentapetalae View MSA
122790941 5272 Eudicot View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.6788 0.0 109.603 High  
cufflinks 59.0366 0.0 158.505 High  
cufflinks 191.192 0.0 589.971 High High
cufflinks 43.171 0.0 113.534 High  
cufflinks 31.2067 0.0 80.9774    
cufflinks 109.923 0.0 314.592 High  
cufflinks 24.4106 0.0 63.1196    
cufflinks 172.709 0.0 529.817 High High
cufflinks 12.9988 0.0 34.1276   Low
cufflinks 34.9771 0.0 90.9745    
cufflinks 28.6804 0.0 74.2548    

0 Strain