Gene : Phvul.008G272500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13773:SF10 - PHOSPHATIDATE CYTIDYLYLTRANSFERASE Genomic Order:  2738
Name:  ? Phvul.008G272500 Secondary Identifier:  ? PAC:37159552
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-1319 Phaseolus vulgaris pathologic  
Pvulgaris PWY4FS-7 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G272500 0.5kb upstream 0.5kb upstream 3637 true Chr08: 61644700-61648336 Phaseolus vulgaris
Phvul.008G272500 0.5kb upstream 0.5kb upstream 500 false Chr08: 61647837-61648336 Phaseolus vulgaris
Phvul.008G272500 0.5kb downstream 0.5kb downstream 3637 true Chr08: 61644200-61647836 Phaseolus vulgaris
Phvul.008G272500 0.5kb downstream 0.5kb downstream 500 false Chr08: 61644200-61644699 Phaseolus vulgaris
Phvul.008G272500 1.0kb upstream 1.0kb upstream 4137 true Chr08: 61644700-61648836 Phaseolus vulgaris
Phvul.008G272500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 61647837-61648836 Phaseolus vulgaris
Phvul.008G272500 1.0kb downstream 1.0kb downstream 4137 true Chr08: 61643700-61647836 Phaseolus vulgaris
Phvul.008G272500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 61643700-61644699 Phaseolus vulgaris
Phvul.008G272500 2.0kb upstream 2.0kb upstream 5137 true Chr08: 61644700-61649836 Phaseolus vulgaris
Phvul.008G272500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 61647837-61649836 Phaseolus vulgaris
Phvul.008G272500 2.0kb downstream 2.0kb downstream 5137 true Chr08: 61642700-61647836 Phaseolus vulgaris
Phvul.008G272500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 61642700-61644699 Phaseolus vulgaris
Phvul.008G272500 5.0kb upstream 5.0kb upstream 8137 true Chr08: 61644700-61652836 Phaseolus vulgaris
Phvul.008G272500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 61647837-61652836 Phaseolus vulgaris
Phvul.008G272500 5.0kb downstream 5.0kb downstream 8137 true Chr08: 61639700-61647836 Phaseolus vulgaris
Phvul.008G272500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 61639700-61644699 Phaseolus vulgaris
Phvul.008G272500 10.0kb upstream 10.0kb upstream 13137 true Chr08: 61644700-61657836 Phaseolus vulgaris
Phvul.008G272500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 61647837-61657836 Phaseolus vulgaris
Phvul.008G272500 10.0kb downstream 10.0kb downstream 13137 true Chr08: 61634700-61647836 Phaseolus vulgaris
Phvul.008G272500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 61634700-61644699 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296786 5265 Fabidae View MSA
124063669 5270 Rosid View MSA
123751234 5271 Pentapetalae View MSA
122787509 5272 Eudicot View MSA
122045670 5273 Angiosperm View MSA
121346295 5274 Embryophyte View MSA
123428107 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.111732 0.0 0.493897 Low  
cufflinks 0.106714 0.0 0.474932 Low  
cufflinks 0.0623563 0.0 0.291248 Low  
cufflinks 0.657763 0.0 2.51894   High
cufflinks 0.0670447 0.0 0.314812 Low  
cufflinks 0.390126 0.0 1.54988 Low High
cufflinks 0.18007 0.0 0.766638 Low  
cufflinks 0.0317687 0.0 0.160853 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.362207 0.0 1.45507 Low  

0 Strain