Gene : Phvul.011G016400 P. vulgaris v2.1
Defline:  (1 of 1) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) Genomic Order:  166
Name:  ? Phvul.011G016400 Secondary Identifier:  ? PAC:37154852
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G016400 0.5kb upstream 0.5kb upstream 5147 true Chr11: 1284306-1289452 Phaseolus vulgaris
Phvul.011G016400 0.5kb upstream 0.5kb upstream 500 false Chr11: 1284306-1284805 Phaseolus vulgaris
Phvul.011G016400 0.5kb downstream 0.5kb downstream 5147 true Chr11: 1284806-1289952 Phaseolus vulgaris
Phvul.011G016400 0.5kb downstream 0.5kb downstream 500 false Chr11: 1289453-1289952 Phaseolus vulgaris
Phvul.011G016400 1.0kb upstream 1.0kb upstream 5647 true Chr11: 1283806-1289452 Phaseolus vulgaris
Phvul.011G016400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1283806-1284805 Phaseolus vulgaris
Phvul.011G016400 1.0kb downstream 1.0kb downstream 5647 true Chr11: 1284806-1290452 Phaseolus vulgaris
Phvul.011G016400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1289453-1290452 Phaseolus vulgaris
Phvul.011G016400 2.0kb upstream 2.0kb upstream 6647 true Chr11: 1282806-1289452 Phaseolus vulgaris
Phvul.011G016400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1282806-1284805 Phaseolus vulgaris
Phvul.011G016400 2.0kb downstream 2.0kb downstream 6647 true Chr11: 1284806-1291452 Phaseolus vulgaris
Phvul.011G016400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1289453-1291452 Phaseolus vulgaris
Phvul.011G016400 5.0kb upstream 5.0kb upstream 9647 true Chr11: 1279806-1289452 Phaseolus vulgaris
Phvul.011G016400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1279806-1284805 Phaseolus vulgaris
Phvul.011G016400 5.0kb downstream 5.0kb downstream 9647 true Chr11: 1284806-1294452 Phaseolus vulgaris
Phvul.011G016400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1289453-1294452 Phaseolus vulgaris
Phvul.011G016400 10.0kb upstream 10.0kb upstream 14647 true Chr11: 1274806-1289452 Phaseolus vulgaris
Phvul.011G016400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1274806-1284805 Phaseolus vulgaris
Phvul.011G016400 10.0kb downstream 10.0kb downstream 14647 true Chr11: 1284806-1299452 Phaseolus vulgaris
Phvul.011G016400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1289453-1299452 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301612 5265 Fabidae View MSA
124062387 5270 Rosid View MSA
123751324 5271 Pentapetalae View MSA
122790966 5272 Eudicot View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.6129 0.0 76.9875    
cufflinks 13.6977 0.0 35.7037    
cufflinks 95.6601 0.0 274.338 High High
cufflinks 8.35146 0.0 22.6395    
cufflinks 12.2609 0.0 32.2943    
cufflinks 34.6602 0.0 90.6496 High  
cufflinks 2.19596 0.0 6.75028   Low
cufflinks 1.14004 0.0 3.75206   Low
cufflinks 1.44755 0.0 4.67625   Low
cufflinks 14.1197 0.0 36.7988    
cufflinks 10.622 0.0 28.1505    

0 Strain