Gene : Phvul.L002040 P. vulgaris v2.1
Defline:  (1 of 4) K02892 - large subunit ribosomal protein L23 (RP-L23, MRPL23, rplW) Genomic Order:  5
Name:  ? Phvul.L002040 Secondary Identifier:  ? PAC:37157475
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.L002040 0.5kb upstream 0.5kb upstream 4349 true scaffold_138: 28746-33094 Phaseolus vulgaris
Phvul.L002040 0.5kb upstream 0.5kb upstream 500 false scaffold_138: 32595-33094 Phaseolus vulgaris
Phvul.L002040 0.5kb downstream 0.5kb downstream 4349 true scaffold_138: 28246-32594 Phaseolus vulgaris
Phvul.L002040 0.5kb downstream 0.5kb downstream 500 false scaffold_138: 28246-28745 Phaseolus vulgaris
Phvul.L002040 1.0kb upstream 1.0kb upstream 4849 true scaffold_138: 28746-33594 Phaseolus vulgaris
Phvul.L002040 1.0kb upstream 1.0kb upstream 1000 false scaffold_138: 32595-33594 Phaseolus vulgaris
Phvul.L002040 1.0kb downstream 1.0kb downstream 4849 true scaffold_138: 27746-32594 Phaseolus vulgaris
Phvul.L002040 1.0kb downstream 1.0kb downstream 1000 false scaffold_138: 27746-28745 Phaseolus vulgaris
Phvul.L002040 2.0kb upstream 2.0kb upstream 5849 true scaffold_138: 28746-34594 Phaseolus vulgaris
Phvul.L002040 2.0kb upstream 2.0kb upstream 2000 false scaffold_138: 32595-34594 Phaseolus vulgaris
Phvul.L002040 2.0kb downstream 2.0kb downstream 5849 true scaffold_138: 26746-32594 Phaseolus vulgaris
Phvul.L002040 2.0kb downstream 2.0kb downstream 2000 false scaffold_138: 26746-28745 Phaseolus vulgaris
Phvul.L002040 5.0kb upstream 5.0kb upstream 8849 true scaffold_138: 28746-37594 Phaseolus vulgaris
Phvul.L002040 5.0kb upstream 5.0kb upstream 5000 false scaffold_138: 32595-37594 Phaseolus vulgaris
Phvul.L002040 5.0kb downstream 5.0kb downstream 8849 true scaffold_138: 23746-32594 Phaseolus vulgaris
Phvul.L002040 5.0kb downstream 5.0kb downstream 5000 false scaffold_138: 23746-28745 Phaseolus vulgaris
Phvul.L002040 10.0kb upstream 10.0kb upstream 13849 true scaffold_138: 28746-42594 Phaseolus vulgaris
Phvul.L002040 10.0kb upstream 10.0kb upstream 10000 false scaffold_138: 32595-42594 Phaseolus vulgaris
Phvul.L002040 10.0kb downstream 10.0kb downstream 13849 true scaffold_138: 18746-32594 Phaseolus vulgaris
Phvul.L002040 10.0kb downstream 10.0kb downstream 10000 false scaffold_138: 18746-28745 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299568 5265 Fabidae View MSA
124068912 5270 Rosid View MSA
123740865 5271 Pentapetalae View MSA
122789044 5272 Eudicot View MSA
122044444 5273 Angiosperm View MSA
121349805 5274 Embryophyte View MSA
123426659 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7687 0.0 39.7068   Low
cufflinks 17.3392 0.0 46.0437    
cufflinks 16.9063 0.0 45.0993   Low
cufflinks 21.8641 0.0 57.3532    
cufflinks 27.5607 0.0 71.6606   High
cufflinks 18.7913 0.0 49.6005    
cufflinks 23.9258 0.0 62.1611    
cufflinks 24.1641 0.0 62.8319    
cufflinks 31.177 0.0 80.6148 High High
cufflinks 25.3238 0.0 65.9758    
cufflinks 23.1894 0.0 60.5445    

0 Strain