Gene : Phvul.011G054700 P. vulgaris v2.1
Defline:  (1 of 3) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  563
Name:  ? Phvul.011G054700 Secondary Identifier:  ? PAC:37154937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G054700 0.5kb upstream 0.5kb upstream 6843 true Chr11: 4805870-4812712 Phaseolus vulgaris
Phvul.011G054700 0.5kb upstream 0.5kb upstream 500 false Chr11: 4812213-4812712 Phaseolus vulgaris
Phvul.011G054700 0.5kb downstream 0.5kb downstream 6843 true Chr11: 4805370-4812212 Phaseolus vulgaris
Phvul.011G054700 0.5kb downstream 0.5kb downstream 500 false Chr11: 4805370-4805869 Phaseolus vulgaris
Phvul.011G054700 1.0kb upstream 1.0kb upstream 7343 true Chr11: 4805870-4813212 Phaseolus vulgaris
Phvul.011G054700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4812213-4813212 Phaseolus vulgaris
Phvul.011G054700 1.0kb downstream 1.0kb downstream 7343 true Chr11: 4804870-4812212 Phaseolus vulgaris
Phvul.011G054700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4804870-4805869 Phaseolus vulgaris
Phvul.011G054700 2.0kb upstream 2.0kb upstream 8343 true Chr11: 4805870-4814212 Phaseolus vulgaris
Phvul.011G054700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4812213-4814212 Phaseolus vulgaris
Phvul.011G054700 2.0kb downstream 2.0kb downstream 8343 true Chr11: 4803870-4812212 Phaseolus vulgaris
Phvul.011G054700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4803870-4805869 Phaseolus vulgaris
Phvul.011G054700 5.0kb upstream 5.0kb upstream 11343 true Chr11: 4805870-4817212 Phaseolus vulgaris
Phvul.011G054700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4812213-4817212 Phaseolus vulgaris
Phvul.011G054700 5.0kb downstream 5.0kb downstream 11343 true Chr11: 4800870-4812212 Phaseolus vulgaris
Phvul.011G054700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4800870-4805869 Phaseolus vulgaris
Phvul.011G054700 10.0kb upstream 10.0kb upstream 16343 true Chr11: 4805870-4822212 Phaseolus vulgaris
Phvul.011G054700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4812213-4822212 Phaseolus vulgaris
Phvul.011G054700 10.0kb downstream 10.0kb downstream 16343 true Chr11: 4795870-4812212 Phaseolus vulgaris
Phvul.011G054700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4795870-4805869 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304269 5265 Fabidae View MSA
124067030 5270 Rosid View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.28464 0.0 4.19566   Low
cufflinks 2.21589 0.0 6.81552    
cufflinks 4.84468 0.0 13.644   High
cufflinks 3.44482 0.0 10.1312    
cufflinks 3.01345 0.0 9.00485    
cufflinks 3.72055 0.0 10.7861    
cufflinks 3.76029 0.0 10.8755    
cufflinks 3.63264 0.0 10.5024    
cufflinks 3.54474 0.0 10.3557    
cufflinks 2.04565 0.0 6.35154    
cufflinks 2.42254 0.0 7.41129    

0 Strain