Gene : Phvul.011G048400 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  501
Name:  ? Phvul.011G048400 Secondary Identifier:  ? PAC:37155576
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G048400 0.5kb upstream 0.5kb upstream 3686 true Chr11: 4351085-4354770 Phaseolus vulgaris
Phvul.011G048400 0.5kb upstream 0.5kb upstream 500 false Chr11: 4354271-4354770 Phaseolus vulgaris
Phvul.011G048400 0.5kb downstream 0.5kb downstream 3686 true Chr11: 4350585-4354270 Phaseolus vulgaris
Phvul.011G048400 0.5kb downstream 0.5kb downstream 500 false Chr11: 4350585-4351084 Phaseolus vulgaris
Phvul.011G048400 1.0kb upstream 1.0kb upstream 4186 true Chr11: 4351085-4355270 Phaseolus vulgaris
Phvul.011G048400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4354271-4355270 Phaseolus vulgaris
Phvul.011G048400 1.0kb downstream 1.0kb downstream 4186 true Chr11: 4350085-4354270 Phaseolus vulgaris
Phvul.011G048400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4350085-4351084 Phaseolus vulgaris
Phvul.011G048400 2.0kb upstream 2.0kb upstream 5186 true Chr11: 4351085-4356270 Phaseolus vulgaris
Phvul.011G048400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4354271-4356270 Phaseolus vulgaris
Phvul.011G048400 2.0kb downstream 2.0kb downstream 5186 true Chr11: 4349085-4354270 Phaseolus vulgaris
Phvul.011G048400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4349085-4351084 Phaseolus vulgaris
Phvul.011G048400 5.0kb upstream 5.0kb upstream 8186 true Chr11: 4351085-4359270 Phaseolus vulgaris
Phvul.011G048400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4354271-4359270 Phaseolus vulgaris
Phvul.011G048400 5.0kb downstream 5.0kb downstream 8186 true Chr11: 4346085-4354270 Phaseolus vulgaris
Phvul.011G048400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4346085-4351084 Phaseolus vulgaris
Phvul.011G048400 10.0kb upstream 10.0kb upstream 13186 true Chr11: 4351085-4364270 Phaseolus vulgaris
Phvul.011G048400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4354271-4364270 Phaseolus vulgaris
Phvul.011G048400 10.0kb downstream 10.0kb downstream 13186 true Chr11: 4341085-4354270 Phaseolus vulgaris
Phvul.011G048400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4341085-4351084 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303678 5265 Fabidae View MSA
124063386 5270 Rosid View MSA
123751448 5271 Pentapetalae View MSA
122786309 5272 Eudicot View MSA
122045873 5273 Angiosperm View MSA
121310522 5274 Embryophyte View MSA
123347983 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.155675 0.0 0.603818 Low  
cufflinks 0.420897 0.0 1.50242 Low High
cufflinks 0.318412 0.0 1.1615 Low  
cufflinks 0.137241 0.0 0.542462 Low  
cufflinks 0.242207 0.0 0.913972 Low  
cufflinks 0.316361 0.0 1.15835 Low  
cufflinks 0.168148 0.0 0.650505 Low  
cufflinks 0.426397 0.0 1.51289 Low High
cufflinks 0.0861091 0.0 0.351845 Low Low
cufflinks 0.194413 0.0 0.742255 Low  
cufflinks 0.119961 0.0 0.477953 Low Low

0 Strain