Gene : Phvul.011G047300 P. vulgaris v2.1
Defline:  (1 of 1) K12670 - oligosaccharyltransferase complex subunit beta (WBP1) Genomic Order:  490
Name:  ? Phvul.011G047300 Secondary Identifier:  ? PAC:37156460
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G047300 0.5kb upstream 0.5kb upstream 4876 true Chr11: 4257435-4262310 Phaseolus vulgaris
Phvul.011G047300 0.5kb upstream 0.5kb upstream 500 false Chr11: 4257435-4257934 Phaseolus vulgaris
Phvul.011G047300 0.5kb downstream 0.5kb downstream 4876 true Chr11: 4257935-4262810 Phaseolus vulgaris
Phvul.011G047300 0.5kb downstream 0.5kb downstream 500 false Chr11: 4262311-4262810 Phaseolus vulgaris
Phvul.011G047300 1.0kb upstream 1.0kb upstream 5376 true Chr11: 4256935-4262310 Phaseolus vulgaris
Phvul.011G047300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4256935-4257934 Phaseolus vulgaris
Phvul.011G047300 1.0kb downstream 1.0kb downstream 5376 true Chr11: 4257935-4263310 Phaseolus vulgaris
Phvul.011G047300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4262311-4263310 Phaseolus vulgaris
Phvul.011G047300 2.0kb upstream 2.0kb upstream 6376 true Chr11: 4255935-4262310 Phaseolus vulgaris
Phvul.011G047300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4255935-4257934 Phaseolus vulgaris
Phvul.011G047300 2.0kb downstream 2.0kb downstream 6376 true Chr11: 4257935-4264310 Phaseolus vulgaris
Phvul.011G047300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4262311-4264310 Phaseolus vulgaris
Phvul.011G047300 5.0kb upstream 5.0kb upstream 9376 true Chr11: 4252935-4262310 Phaseolus vulgaris
Phvul.011G047300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 4252935-4257934 Phaseolus vulgaris
Phvul.011G047300 5.0kb downstream 5.0kb downstream 9376 true Chr11: 4257935-4267310 Phaseolus vulgaris
Phvul.011G047300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4262311-4267310 Phaseolus vulgaris
Phvul.011G047300 10.0kb upstream 10.0kb upstream 14376 true Chr11: 4247935-4262310 Phaseolus vulgaris
Phvul.011G047300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 4247935-4257934 Phaseolus vulgaris
Phvul.011G047300 10.0kb downstream 10.0kb downstream 14376 true Chr11: 4257935-4272310 Phaseolus vulgaris
Phvul.011G047300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4262311-4272310 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300131 5265 Fabidae View MSA
124068275 5270 Rosid View MSA
123750728 5271 Pentapetalae View MSA
122793398 5272 Eudicot View MSA
122043093 5273 Angiosperm View MSA
121346216 5274 Embryophyte View MSA
123424757 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.5774 0.0 138.342 High Low
cufflinks 103.688 0.0 288.136 High High
cufflinks 54.7967 0.0 144.307 High Low
cufflinks 115.171 0.0 323.357 High High
cufflinks 75.4231 0.0 202.826 High  
cufflinks 54.88 0.0 144.405 High Low
cufflinks 68.9368 0.0 184.404 High  
cufflinks 72.2772 0.0 194.463 High  
cufflinks 91.9466 0.0 251.672 High  
cufflinks 75.8546 0.0 204.717 High  
cufflinks 84.5281 0.0 229.628 High  

0 Strain