Gene : Phvul.011G027300 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.1.257 - tRNA (pseudouridine(54)-N(1))-methyltransferase / M(1)-Psi methyltransferase Genomic Order:  291
Name:  ? Phvul.011G027300 Secondary Identifier:  ? PAC:37156528
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G027300 0.5kb upstream 0.5kb upstream 3262 true Chr11: 2387638-2390899 Phaseolus vulgaris
Phvul.011G027300 0.5kb upstream 0.5kb upstream 500 false Chr11: 2387638-2388137 Phaseolus vulgaris
Phvul.011G027300 0.5kb downstream 0.5kb downstream 3262 true Chr11: 2388138-2391399 Phaseolus vulgaris
Phvul.011G027300 0.5kb downstream 0.5kb downstream 500 false Chr11: 2390900-2391399 Phaseolus vulgaris
Phvul.011G027300 1.0kb upstream 1.0kb upstream 3762 true Chr11: 2387138-2390899 Phaseolus vulgaris
Phvul.011G027300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2387138-2388137 Phaseolus vulgaris
Phvul.011G027300 1.0kb downstream 1.0kb downstream 3762 true Chr11: 2388138-2391899 Phaseolus vulgaris
Phvul.011G027300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2390900-2391899 Phaseolus vulgaris
Phvul.011G027300 2.0kb upstream 2.0kb upstream 4762 true Chr11: 2386138-2390899 Phaseolus vulgaris
Phvul.011G027300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2386138-2388137 Phaseolus vulgaris
Phvul.011G027300 2.0kb downstream 2.0kb downstream 4762 true Chr11: 2388138-2392899 Phaseolus vulgaris
Phvul.011G027300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2390900-2392899 Phaseolus vulgaris
Phvul.011G027300 5.0kb upstream 5.0kb upstream 7762 true Chr11: 2383138-2390899 Phaseolus vulgaris
Phvul.011G027300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2383138-2388137 Phaseolus vulgaris
Phvul.011G027300 5.0kb downstream 5.0kb downstream 7762 true Chr11: 2388138-2395899 Phaseolus vulgaris
Phvul.011G027300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2390900-2395899 Phaseolus vulgaris
Phvul.011G027300 10.0kb upstream 10.0kb upstream 12762 true Chr11: 2378138-2390899 Phaseolus vulgaris
Phvul.011G027300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2378138-2388137 Phaseolus vulgaris
Phvul.011G027300 10.0kb downstream 10.0kb downstream 12762 true Chr11: 2388138-2400899 Phaseolus vulgaris
Phvul.011G027300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2390900-2400899 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303918 5265 Fabidae View MSA
124066897 5270 Rosid View MSA
123749345 5271 Pentapetalae View MSA
122789424 5272 Eudicot View MSA
122046063 5273 Angiosperm View MSA
121345370 5274 Embryophyte View MSA
123425050 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.4945 0.0 78.978   High
cufflinks 26.7524 0.0 69.5119    
cufflinks 23.9674 0.0 62.4532    
cufflinks 26.9126 0.0 69.9419    
cufflinks 20.9724 0.0 55.3171    
cufflinks 17.5401 0.0 46.5404   Low
cufflinks 23.6681 0.0 61.7126    
cufflinks 23.3983 0.0 60.9446    
cufflinks 24.4892 0.0 63.7621    
cufflinks 20.0589 0.0 52.87   Low
cufflinks 25.6759 0.0 66.9072    

0 Strain