Gene : Phvul.011G092700 P. vulgaris v2.1
Defline:  (1 of 2) K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) Genomic Order:  931
Name:  ? Phvul.011G092700 Secondary Identifier:  ? PAC:37156965
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G092700 0.5kb upstream 0.5kb upstream 7935 true Chr11: 9271672-9279606 Phaseolus vulgaris
Phvul.011G092700 0.5kb upstream 0.5kb upstream 500 false Chr11: 9279107-9279606 Phaseolus vulgaris
Phvul.011G092700 0.5kb downstream 0.5kb downstream 7935 true Chr11: 9271172-9279106 Phaseolus vulgaris
Phvul.011G092700 0.5kb downstream 0.5kb downstream 500 false Chr11: 9271172-9271671 Phaseolus vulgaris
Phvul.011G092700 1.0kb upstream 1.0kb upstream 8435 true Chr11: 9271672-9280106 Phaseolus vulgaris
Phvul.011G092700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9279107-9280106 Phaseolus vulgaris
Phvul.011G092700 1.0kb downstream 1.0kb downstream 8435 true Chr11: 9270672-9279106 Phaseolus vulgaris
Phvul.011G092700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9270672-9271671 Phaseolus vulgaris
Phvul.011G092700 2.0kb upstream 2.0kb upstream 9435 true Chr11: 9271672-9281106 Phaseolus vulgaris
Phvul.011G092700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9279107-9281106 Phaseolus vulgaris
Phvul.011G092700 2.0kb downstream 2.0kb downstream 9435 true Chr11: 9269672-9279106 Phaseolus vulgaris
Phvul.011G092700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9269672-9271671 Phaseolus vulgaris
Phvul.011G092700 5.0kb upstream 5.0kb upstream 12435 true Chr11: 9271672-9284106 Phaseolus vulgaris
Phvul.011G092700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9279107-9284106 Phaseolus vulgaris
Phvul.011G092700 5.0kb downstream 5.0kb downstream 12435 true Chr11: 9266672-9279106 Phaseolus vulgaris
Phvul.011G092700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9266672-9271671 Phaseolus vulgaris
Phvul.011G092700 10.0kb upstream 10.0kb upstream 17435 true Chr11: 9271672-9289106 Phaseolus vulgaris
Phvul.011G092700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9279107-9289106 Phaseolus vulgaris
Phvul.011G092700 10.0kb downstream 10.0kb downstream 17435 true Chr11: 9261672-9279106 Phaseolus vulgaris
Phvul.011G092700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9261672-9271671 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040967 5273 Angiosperm View MSA
122311224 5265 Fabidae View MSA
124065448 5270 Rosid View MSA
123749867 5271 Pentapetalae View MSA
122796132 5272 Eudicot View MSA
121350779 5274 Embryophyte View MSA
123428117 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.7136 0.0 117.892 High High
cufflinks 22.2877 0.0 57.6113    
cufflinks 12.7087 0.0 33.4553   Low
cufflinks 30.4179 0.0 78.934    
cufflinks 32.41 0.0 84.1079    
cufflinks 14.0219 0.0 36.6299   Low
cufflinks 30.5082 0.0 79.3217 High  
cufflinks 23.0385 0.0 59.555    
cufflinks 36.1399 0.0 94.6433 High  
cufflinks 61.34 0.0 165.595 High High
cufflinks 28.4416 0.0 73.6718    

0 Strain