Gene : Phvul.011G095000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31852:SF7 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  952
Name:  ? Phvul.011G095000 Secondary Identifier:  ? PAC:37157093
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G095000 0.5kb upstream 0.5kb upstream 2036 true Chr11: 9611836-9613871 Phaseolus vulgaris
Phvul.011G095000 0.5kb upstream 0.5kb upstream 500 false Chr11: 9613372-9613871 Phaseolus vulgaris
Phvul.011G095000 0.5kb downstream 0.5kb downstream 2036 true Chr11: 9611336-9613371 Phaseolus vulgaris
Phvul.011G095000 0.5kb downstream 0.5kb downstream 500 false Chr11: 9611336-9611835 Phaseolus vulgaris
Phvul.011G095000 1.0kb upstream 1.0kb upstream 2536 true Chr11: 9611836-9614371 Phaseolus vulgaris
Phvul.011G095000 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9613372-9614371 Phaseolus vulgaris
Phvul.011G095000 1.0kb downstream 1.0kb downstream 2536 true Chr11: 9610836-9613371 Phaseolus vulgaris
Phvul.011G095000 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9610836-9611835 Phaseolus vulgaris
Phvul.011G095000 2.0kb upstream 2.0kb upstream 3536 true Chr11: 9611836-9615371 Phaseolus vulgaris
Phvul.011G095000 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9613372-9615371 Phaseolus vulgaris
Phvul.011G095000 2.0kb downstream 2.0kb downstream 3536 true Chr11: 9609836-9613371 Phaseolus vulgaris
Phvul.011G095000 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9609836-9611835 Phaseolus vulgaris
Phvul.011G095000 5.0kb upstream 5.0kb upstream 6536 true Chr11: 9611836-9618371 Phaseolus vulgaris
Phvul.011G095000 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9613372-9618371 Phaseolus vulgaris
Phvul.011G095000 5.0kb downstream 5.0kb downstream 6536 true Chr11: 9606836-9613371 Phaseolus vulgaris
Phvul.011G095000 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9606836-9611835 Phaseolus vulgaris
Phvul.011G095000 10.0kb upstream 10.0kb upstream 11536 true Chr11: 9611836-9623371 Phaseolus vulgaris
Phvul.011G095000 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9613372-9623371 Phaseolus vulgaris
Phvul.011G095000 10.0kb downstream 10.0kb downstream 11536 true Chr11: 9601836-9613371 Phaseolus vulgaris
Phvul.011G095000 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9601836-9611835 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305148 5265 Fabidae View MSA
124065913 5270 Rosid View MSA
123751037 5271 Pentapetalae View MSA
122791768 5272 Eudicot View MSA
122047414 5273 Angiosperm View MSA
121346777 5274 Embryophyte View MSA
123380442 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7282 0.0 38.2199    
cufflinks 11.7967 0.0 38.53    
cufflinks 20.1467 0.0 61.1845   High
cufflinks 16.2038 0.0 48.7759    
cufflinks 14.3824 0.0 44.8475    
cufflinks 17.8156 0.0 62.1116   High
cufflinks 6.70483 0.0 24.5978   Low
cufflinks 5.05303 0.0 20.2669   Low
cufflinks 8.20488 0.0 28.68    
cufflinks 9.00273 0.0 31.1026    
cufflinks 11.6927 0.0 38.0326    

0 Strain