Gene : Phvul.011G098200 P. vulgaris v2.1
Defline:  (1 of 4) PTHR24362:SF258 - SERINE/THREONINE-PROTEIN KINASE NEK5 Genomic Order:  987
Name:  ? Phvul.011G098200 Secondary Identifier:  ? PAC:37157130
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G098200 0.5kb upstream 0.5kb upstream 7390 true Chr11: 10129401-10136790 Phaseolus vulgaris
Phvul.011G098200 0.5kb upstream 0.5kb upstream 500 false Chr11: 10136291-10136790 Phaseolus vulgaris
Phvul.011G098200 0.5kb downstream 0.5kb downstream 7390 true Chr11: 10128901-10136290 Phaseolus vulgaris
Phvul.011G098200 0.5kb downstream 0.5kb downstream 500 false Chr11: 10128901-10129400 Phaseolus vulgaris
Phvul.011G098200 1.0kb upstream 1.0kb upstream 7890 true Chr11: 10129401-10137290 Phaseolus vulgaris
Phvul.011G098200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10136291-10137290 Phaseolus vulgaris
Phvul.011G098200 1.0kb downstream 1.0kb downstream 7890 true Chr11: 10128401-10136290 Phaseolus vulgaris
Phvul.011G098200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10128401-10129400 Phaseolus vulgaris
Phvul.011G098200 2.0kb upstream 2.0kb upstream 8890 true Chr11: 10129401-10138290 Phaseolus vulgaris
Phvul.011G098200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10136291-10138290 Phaseolus vulgaris
Phvul.011G098200 2.0kb downstream 2.0kb downstream 8890 true Chr11: 10127401-10136290 Phaseolus vulgaris
Phvul.011G098200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10127401-10129400 Phaseolus vulgaris
Phvul.011G098200 5.0kb upstream 5.0kb upstream 11890 true Chr11: 10129401-10141290 Phaseolus vulgaris
Phvul.011G098200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10136291-10141290 Phaseolus vulgaris
Phvul.011G098200 5.0kb downstream 5.0kb downstream 11890 true Chr11: 10124401-10136290 Phaseolus vulgaris
Phvul.011G098200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10124401-10129400 Phaseolus vulgaris
Phvul.011G098200 10.0kb upstream 10.0kb upstream 16890 true Chr11: 10129401-10146290 Phaseolus vulgaris
Phvul.011G098200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10136291-10146290 Phaseolus vulgaris
Phvul.011G098200 10.0kb downstream 10.0kb downstream 16890 true Chr11: 10119401-10136290 Phaseolus vulgaris
Phvul.011G098200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10119401-10129400 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309247 5265 Fabidae View MSA
124063961 5270 Rosid View MSA
123747232 5271 Pentapetalae View MSA
122789599 5272 Eudicot View MSA
122047293 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351770 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.534673 0.0 2.06006   Low
cufflinks 2.87759 0.0 10.9477    
cufflinks 8.08782 0.0 25.8564    
cufflinks 3.46205 0.0 12.9478    
cufflinks 4.70815 0.0 14.3593    
cufflinks 13.9171 0.0 44.2944   High
cufflinks 3.80126 0.0 11.8147    
cufflinks 1.73462 0.0 6.30454    
cufflinks 9.65827 0.0 30.8729   High
cufflinks 1.45019 0.0 5.8814    
cufflinks 5.32215 0.0 18.1668    

0 Strain