Gene : Phvul.011G097800 P. vulgaris v2.1
Defline:  (1 of 5) K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1) Genomic Order:  982
Name:  ? Phvul.011G097800 Secondary Identifier:  ? PAC:37156347
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G097800 0.5kb upstream 0.5kb upstream 10073 true Chr11: 10044089-10054161 Phaseolus vulgaris
Phvul.011G097800 0.5kb upstream 0.5kb upstream 500 false Chr11: 10053662-10054161 Phaseolus vulgaris
Phvul.011G097800 0.5kb downstream 0.5kb downstream 10073 true Chr11: 10043589-10053661 Phaseolus vulgaris
Phvul.011G097800 0.5kb downstream 0.5kb downstream 500 false Chr11: 10043589-10044088 Phaseolus vulgaris
Phvul.011G097800 1.0kb upstream 1.0kb upstream 10573 true Chr11: 10044089-10054661 Phaseolus vulgaris
Phvul.011G097800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10053662-10054661 Phaseolus vulgaris
Phvul.011G097800 1.0kb downstream 1.0kb downstream 10573 true Chr11: 10043089-10053661 Phaseolus vulgaris
Phvul.011G097800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10043089-10044088 Phaseolus vulgaris
Phvul.011G097800 2.0kb upstream 2.0kb upstream 11573 true Chr11: 10044089-10055661 Phaseolus vulgaris
Phvul.011G097800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10053662-10055661 Phaseolus vulgaris
Phvul.011G097800 2.0kb downstream 2.0kb downstream 11573 true Chr11: 10042089-10053661 Phaseolus vulgaris
Phvul.011G097800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10042089-10044088 Phaseolus vulgaris
Phvul.011G097800 5.0kb upstream 5.0kb upstream 14573 true Chr11: 10044089-10058661 Phaseolus vulgaris
Phvul.011G097800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10053662-10058661 Phaseolus vulgaris
Phvul.011G097800 5.0kb downstream 5.0kb downstream 14573 true Chr11: 10039089-10053661 Phaseolus vulgaris
Phvul.011G097800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10039089-10044088 Phaseolus vulgaris
Phvul.011G097800 10.0kb upstream 10.0kb upstream 19573 true Chr11: 10044089-10063661 Phaseolus vulgaris
Phvul.011G097800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10053662-10063661 Phaseolus vulgaris
Phvul.011G097800 10.0kb downstream 10.0kb downstream 19573 true Chr11: 10034089-10053661 Phaseolus vulgaris
Phvul.011G097800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10034089-10044088 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306137 5265 Fabidae View MSA
124038496 5270 Rosid View MSA
123744082 5271 Pentapetalae View MSA
122796616 5272 Eudicot View MSA
122050556 5273 Angiosperm View MSA
123429022 5275 Viridiplantae View MSA
121311990 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0207568 0.0 0.0969095 Low Low
cufflinks 0.327338 0.0 2.63252 Low High
cufflinks 0.0352305 0.0 0.168465 Low  
cufflinks 0.0212083 0.0 0.10189 Low Low
cufflinks 0.0368725 0.0 0.174121 Low  
cufflinks 0.208746 0.0 1.78087 Low  
cufflinks 0.248887 0.0 1.72373 Low High
cufflinks 0.142606 0.0 1.58244 Low  
cufflinks 0.0999376 0.0 0.429011 Low  
cufflinks 0.251529 0.0 1.92758 Low High
cufflinks 0.0430164 0.0 0.201394 Low  

0 Strain