Gene : Phvul.011G083800 P. vulgaris v2.1
Defline:  (1 of 4) K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Genomic Order:  844
Name:  ? Phvul.011G083800 Secondary Identifier:  ? PAC:37156353
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G083800 0.5kb upstream 0.5kb upstream 5109 true Chr11: 7906907-7912015 Phaseolus vulgaris
Phvul.011G083800 0.5kb upstream 0.5kb upstream 500 false Chr11: 7911516-7912015 Phaseolus vulgaris
Phvul.011G083800 0.5kb downstream 0.5kb downstream 5109 true Chr11: 7906407-7911515 Phaseolus vulgaris
Phvul.011G083800 0.5kb downstream 0.5kb downstream 500 false Chr11: 7906407-7906906 Phaseolus vulgaris
Phvul.011G083800 1.0kb upstream 1.0kb upstream 5609 true Chr11: 7906907-7912515 Phaseolus vulgaris
Phvul.011G083800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 7911516-7912515 Phaseolus vulgaris
Phvul.011G083800 1.0kb downstream 1.0kb downstream 5609 true Chr11: 7905907-7911515 Phaseolus vulgaris
Phvul.011G083800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 7905907-7906906 Phaseolus vulgaris
Phvul.011G083800 2.0kb upstream 2.0kb upstream 6609 true Chr11: 7906907-7913515 Phaseolus vulgaris
Phvul.011G083800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 7911516-7913515 Phaseolus vulgaris
Phvul.011G083800 2.0kb downstream 2.0kb downstream 6609 true Chr11: 7904907-7911515 Phaseolus vulgaris
Phvul.011G083800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 7904907-7906906 Phaseolus vulgaris
Phvul.011G083800 5.0kb upstream 5.0kb upstream 9609 true Chr11: 7906907-7916515 Phaseolus vulgaris
Phvul.011G083800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 7911516-7916515 Phaseolus vulgaris
Phvul.011G083800 5.0kb downstream 5.0kb downstream 9609 true Chr11: 7901907-7911515 Phaseolus vulgaris
Phvul.011G083800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 7901907-7906906 Phaseolus vulgaris
Phvul.011G083800 10.0kb upstream 10.0kb upstream 14609 true Chr11: 7906907-7921515 Phaseolus vulgaris
Phvul.011G083800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 7911516-7921515 Phaseolus vulgaris
Phvul.011G083800 10.0kb downstream 10.0kb downstream 14609 true Chr11: 7896907-7911515 Phaseolus vulgaris
Phvul.011G083800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 7896907-7906906 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253817 5265 Fabidae View MSA
124066929 5270 Rosid View MSA
123746983 5271 Pentapetalae View MSA
122795799 5272 Eudicot View MSA
122048605 5273 Angiosperm View MSA
121347913 5274 Embryophyte View MSA
123424841 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0678 0.0 33.784    
cufflinks 10.522 0.0 27.309    
cufflinks 11.5333 0.0 29.8528    
cufflinks 12.0704 0.0 31.2848    
cufflinks 8.93307 0.0 23.3947    
cufflinks 11.5645 0.0 29.9414    
cufflinks 5.66106 0.0 15.2036   Low
cufflinks 7.57244 0.0 19.9131    
cufflinks 2.87367 0.0 8.2149   Low
cufflinks 16.5852 0.0 42.8986   High
cufflinks 13.5725 0.0 35.0962    

0 Strain