Gene : Phvul.011G085900 P. vulgaris v2.1
Defline:  (1 of 3) K10747 - DNA ligase 1 (LIG1) Genomic Order:  864
Name:  ? Phvul.011G085900 Secondary Identifier:  ? PAC:37156484
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G085900 0.5kb upstream 0.5kb upstream 9912 true Chr11: 8185573-8195484 Phaseolus vulgaris
Phvul.011G085900 0.5kb upstream 0.5kb upstream 500 false Chr11: 8194985-8195484 Phaseolus vulgaris
Phvul.011G085900 0.5kb downstream 0.5kb downstream 9912 true Chr11: 8185073-8194984 Phaseolus vulgaris
Phvul.011G085900 0.5kb downstream 0.5kb downstream 500 false Chr11: 8185073-8185572 Phaseolus vulgaris
Phvul.011G085900 1.0kb upstream 1.0kb upstream 10412 true Chr11: 8185573-8195984 Phaseolus vulgaris
Phvul.011G085900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8194985-8195984 Phaseolus vulgaris
Phvul.011G085900 1.0kb downstream 1.0kb downstream 10412 true Chr11: 8184573-8194984 Phaseolus vulgaris
Phvul.011G085900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8184573-8185572 Phaseolus vulgaris
Phvul.011G085900 2.0kb upstream 2.0kb upstream 11412 true Chr11: 8185573-8196984 Phaseolus vulgaris
Phvul.011G085900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8194985-8196984 Phaseolus vulgaris
Phvul.011G085900 2.0kb downstream 2.0kb downstream 11412 true Chr11: 8183573-8194984 Phaseolus vulgaris
Phvul.011G085900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8183573-8185572 Phaseolus vulgaris
Phvul.011G085900 5.0kb upstream 5.0kb upstream 14412 true Chr11: 8185573-8199984 Phaseolus vulgaris
Phvul.011G085900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8194985-8199984 Phaseolus vulgaris
Phvul.011G085900 5.0kb downstream 5.0kb downstream 14412 true Chr11: 8180573-8194984 Phaseolus vulgaris
Phvul.011G085900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8180573-8185572 Phaseolus vulgaris
Phvul.011G085900 10.0kb upstream 10.0kb upstream 19412 true Chr11: 8185573-8204984 Phaseolus vulgaris
Phvul.011G085900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8194985-8204984 Phaseolus vulgaris
Phvul.011G085900 10.0kb downstream 10.0kb downstream 19412 true Chr11: 8175573-8194984 Phaseolus vulgaris
Phvul.011G085900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8175573-8185572 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305144 5265 Fabidae View MSA
124060401 5270 Rosid View MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.4661 0.0 14.2029   Low
cufflinks 10.75 0.0 38.0281   High
cufflinks 6.71135 0.0 20.1453    
cufflinks 4.13945 0.0 16.6405   Low
cufflinks 7.45329 0.0 22.0706    
cufflinks 8.04266 0.0 31.6753    
cufflinks 8.60091 0.0 28.4278    
cufflinks 8.71777 0.0 33.4238    
cufflinks 8.70808 0.0 30.7531    
cufflinks 8.2312 0.0 28.557    
cufflinks 6.50416 0.0 26.1975    

0 Strain