Gene : Phvul.011G085600 P. vulgaris v2.1
Defline:  (1 of 2) PF07557 - Shugoshin C terminus (Shugoshin_C) Genomic Order:  862
Name:  ? Phvul.011G085600 Secondary Identifier:  ? PAC:37155718
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G085600 0.5kb upstream 0.5kb upstream 3341 true Chr11: 8160438-8163778 Phaseolus vulgaris
Phvul.011G085600 0.5kb upstream 0.5kb upstream 500 false Chr11: 8160438-8160937 Phaseolus vulgaris
Phvul.011G085600 0.5kb downstream 0.5kb downstream 3341 true Chr11: 8160938-8164278 Phaseolus vulgaris
Phvul.011G085600 0.5kb downstream 0.5kb downstream 500 false Chr11: 8163779-8164278 Phaseolus vulgaris
Phvul.011G085600 1.0kb upstream 1.0kb upstream 3841 true Chr11: 8159938-8163778 Phaseolus vulgaris
Phvul.011G085600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8159938-8160937 Phaseolus vulgaris
Phvul.011G085600 1.0kb downstream 1.0kb downstream 3841 true Chr11: 8160938-8164778 Phaseolus vulgaris
Phvul.011G085600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8163779-8164778 Phaseolus vulgaris
Phvul.011G085600 2.0kb upstream 2.0kb upstream 4841 true Chr11: 8158938-8163778 Phaseolus vulgaris
Phvul.011G085600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8158938-8160937 Phaseolus vulgaris
Phvul.011G085600 2.0kb downstream 2.0kb downstream 4841 true Chr11: 8160938-8165778 Phaseolus vulgaris
Phvul.011G085600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8163779-8165778 Phaseolus vulgaris
Phvul.011G085600 5.0kb upstream 5.0kb upstream 7841 true Chr11: 8155938-8163778 Phaseolus vulgaris
Phvul.011G085600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8155938-8160937 Phaseolus vulgaris
Phvul.011G085600 5.0kb downstream 5.0kb downstream 7841 true Chr11: 8160938-8168778 Phaseolus vulgaris
Phvul.011G085600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8163779-8168778 Phaseolus vulgaris
Phvul.011G085600 10.0kb upstream 10.0kb upstream 12841 true Chr11: 8150938-8163778 Phaseolus vulgaris
Phvul.011G085600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8150938-8160937 Phaseolus vulgaris
Phvul.011G085600 10.0kb downstream 10.0kb downstream 12841 true Chr11: 8160938-8173778 Phaseolus vulgaris
Phvul.011G085600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8163779-8173778 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028020 5273 Angiosperm View MSA
122306201 5265 Fabidae View MSA
124074097 5270 Rosid View MSA
123746067 5271 Pentapetalae View MSA
122795330 5272 Eudicot View MSA
121349389 5274 Embryophyte View MSA
123381292 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.35316 0.0 4.63796    
cufflinks 6.33101 0.0 18.256   High
cufflinks 1.1024 0.0 3.87629    
cufflinks 1.6148 0.0 5.45851    
cufflinks 3.71521 0.0 11.5329    
cufflinks 4.75801 0.0 14.1441    
cufflinks 3.21728 0.0 9.96338    
cufflinks 1.99594 0.0 6.53044    
cufflinks 2.56922 0.0 8.15618    
cufflinks 0.119434 0.0 0.506336 Low Low
cufflinks 4.44333 0.0 13.3884    

0 Strain