Gene : Phvul.011G177500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23076:SF44 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC Genomic Order:  1760
Name:  ? Phvul.011G177500 Secondary Identifier:  ? PAC:37155738
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G177500 0.5kb upstream 0.5kb upstream 19976 true Chr11: 48859869-48879844 Phaseolus vulgaris
Phvul.011G177500 0.5kb upstream 0.5kb upstream 500 false Chr11: 48879345-48879844 Phaseolus vulgaris
Phvul.011G177500 0.5kb downstream 0.5kb downstream 19976 true Chr11: 48859369-48879344 Phaseolus vulgaris
Phvul.011G177500 0.5kb downstream 0.5kb downstream 500 false Chr11: 48859369-48859868 Phaseolus vulgaris
Phvul.011G177500 1.0kb upstream 1.0kb upstream 20476 true Chr11: 48859869-48880344 Phaseolus vulgaris
Phvul.011G177500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 48879345-48880344 Phaseolus vulgaris
Phvul.011G177500 1.0kb downstream 1.0kb downstream 20476 true Chr11: 48858869-48879344 Phaseolus vulgaris
Phvul.011G177500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 48858869-48859868 Phaseolus vulgaris
Phvul.011G177500 2.0kb upstream 2.0kb upstream 21476 true Chr11: 48859869-48881344 Phaseolus vulgaris
Phvul.011G177500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 48879345-48881344 Phaseolus vulgaris
Phvul.011G177500 2.0kb downstream 2.0kb downstream 21476 true Chr11: 48857869-48879344 Phaseolus vulgaris
Phvul.011G177500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 48857869-48859868 Phaseolus vulgaris
Phvul.011G177500 5.0kb upstream 5.0kb upstream 24476 true Chr11: 48859869-48884344 Phaseolus vulgaris
Phvul.011G177500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 48879345-48884344 Phaseolus vulgaris
Phvul.011G177500 5.0kb downstream 5.0kb downstream 24476 true Chr11: 48854869-48879344 Phaseolus vulgaris
Phvul.011G177500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 48854869-48859868 Phaseolus vulgaris
Phvul.011G177500 10.0kb upstream 10.0kb upstream 29476 true Chr11: 48859869-48889344 Phaseolus vulgaris
Phvul.011G177500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 48879345-48889344 Phaseolus vulgaris
Phvul.011G177500 10.0kb downstream 10.0kb downstream 29476 true Chr11: 48849869-48879344 Phaseolus vulgaris
Phvul.011G177500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 48849869-48859868 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302138 5265 Fabidae View MSA
124065156 5270 Rosid View MSA
123736901 5271 Pentapetalae View MSA
122790141 5272 Eudicot View MSA
122047012 5273 Angiosperm View MSA
121345468 5274 Embryophyte View MSA
123380221 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.14169 0.0 13.6825   Low
cufflinks 13.3501 0.0 34.5358    
cufflinks 13.5153 0.0 34.9774    
cufflinks 5.54575 0.0 14.8199   Low
cufflinks 8.17769 0.0 21.3078    
cufflinks 18.7057 0.0 48.8585   High
cufflinks 7.23953 0.0 18.9024    
cufflinks 10.0597 0.0 26.0148    
cufflinks 7.68974 0.0 20.0512    
cufflinks 12.5015 0.0 32.3193    
cufflinks 4.97733 0.0 13.3456   Low

0 Strain