Gene : Phvul.011G169200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13509:SF2 - PREPROTEIN TRANSLOCASE SEC, SEC61-BETA SUBUNIT PROTEIN-RELATED Genomic Order:  1693
Name:  ? Phvul.011G169200 Secondary Identifier:  ? PAC:37157458
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.011G169200 0.5kb upstream 0.5kb upstream 1841 true Chr11: 47759108-47760948 Phaseolus vulgaris
Phvul.011G169200 0.5kb upstream 0.5kb upstream 500 false Chr11: 47759108-47759607 Phaseolus vulgaris
Phvul.011G169200 0.5kb downstream 0.5kb downstream 1841 true Chr11: 47759608-47761448 Phaseolus vulgaris
Phvul.011G169200 0.5kb downstream 0.5kb downstream 500 false Chr11: 47760949-47761448 Phaseolus vulgaris
Phvul.011G169200 1.0kb upstream 1.0kb upstream 2341 true Chr11: 47758608-47760948 Phaseolus vulgaris
Phvul.011G169200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 47758608-47759607 Phaseolus vulgaris
Phvul.011G169200 1.0kb downstream 1.0kb downstream 2341 true Chr11: 47759608-47761948 Phaseolus vulgaris
Phvul.011G169200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 47760949-47761948 Phaseolus vulgaris
Phvul.011G169200 2.0kb upstream 2.0kb upstream 3341 true Chr11: 47757608-47760948 Phaseolus vulgaris
Phvul.011G169200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 47757608-47759607 Phaseolus vulgaris
Phvul.011G169200 2.0kb downstream 2.0kb downstream 3341 true Chr11: 47759608-47762948 Phaseolus vulgaris
Phvul.011G169200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 47760949-47762948 Phaseolus vulgaris
Phvul.011G169200 5.0kb upstream 5.0kb upstream 6341 true Chr11: 47754608-47760948 Phaseolus vulgaris
Phvul.011G169200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 47754608-47759607 Phaseolus vulgaris
Phvul.011G169200 5.0kb downstream 5.0kb downstream 6341 true Chr11: 47759608-47765948 Phaseolus vulgaris
Phvul.011G169200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 47760949-47765948 Phaseolus vulgaris
Phvul.011G169200 10.0kb upstream 10.0kb upstream 11341 true Chr11: 47749608-47760948 Phaseolus vulgaris
Phvul.011G169200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 47749608-47759607 Phaseolus vulgaris
Phvul.011G169200 10.0kb downstream 10.0kb downstream 11341 true Chr11: 47759608-47770948 Phaseolus vulgaris
Phvul.011G169200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 47760949-47770948 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314120 5265 Fabidae View MSA
124074304 5270 Rosid View MSA
123751679 5271 Pentapetalae View MSA
122797593 5272 Eudicot View MSA
122044826 5273 Angiosperm View MSA
121346729 5274 Embryophyte View MSA
123426765 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 70.5789 0.0 187.085 High  
cufflinks 79.3285 0.0 208.81 High  
cufflinks 44.6789 0.0 123.196 High  
cufflinks 118.529 0.0 306.721 High High
cufflinks 60.2075 0.0 161.92 High  
cufflinks 34.2233 0.0 96.4697 High Low
cufflinks 50.0652 0.0 136.09 High  
cufflinks 55.9506 0.0 151.162 High  
cufflinks 78.6755 0.0 206.505 High  
cufflinks 31.1963 0.0 89.0057   Low
cufflinks 74.1438 0.0 195.911 High  

0 Strain