Gene : Potri.001G153400 P. trichocarpa v3.1
Defline:  (1 of 2) PTHR11405:SF37 - CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN, CHLOROPLASTIC Genomic Order:  1588
Name:  ? Potri.001G153400 Secondary Identifier:  ? PAC:37278414
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa ARGSYNBSUB-PWY Populus trichocarpa pathologic  
Ptrichocarpa ARGSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa CITRULBIO-PWY Populus trichocarpa pathologic  
Ptrichocarpa GLUTAMINDEG-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY0-162 Populus trichocarpa pathologic  
Ptrichocarpa PWY-4984 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5686 Populus trichocarpa pathologic  
Ptrichocarpa PWY-7211 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G153400 0.5kb upstream 0.5kb upstream 4271 true Chr01: 12664239-12668509 Populus trichocarpa
Potri.001G153400 0.5kb upstream 0.5kb upstream 500 false Chr01: 12668010-12668509 Populus trichocarpa
Potri.001G153400 0.5kb downstream 0.5kb downstream 4271 true Chr01: 12663739-12668009 Populus trichocarpa
Potri.001G153400 0.5kb downstream 0.5kb downstream 500 false Chr01: 12663739-12664238 Populus trichocarpa
Potri.001G153400 1.0kb upstream 1.0kb upstream 4771 true Chr01: 12664239-12669009 Populus trichocarpa
Potri.001G153400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 12668010-12669009 Populus trichocarpa
Potri.001G153400 1.0kb downstream 1.0kb downstream 4771 true Chr01: 12663239-12668009 Populus trichocarpa
Potri.001G153400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 12663239-12664238 Populus trichocarpa
Potri.001G153400 2.0kb upstream 2.0kb upstream 5771 true Chr01: 12664239-12670009 Populus trichocarpa
Potri.001G153400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 12668010-12670009 Populus trichocarpa
Potri.001G153400 2.0kb downstream 2.0kb downstream 5771 true Chr01: 12662239-12668009 Populus trichocarpa
Potri.001G153400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 12662239-12664238 Populus trichocarpa
Potri.001G153400 5.0kb upstream 5.0kb upstream 8771 true Chr01: 12664239-12673009 Populus trichocarpa
Potri.001G153400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 12668010-12673009 Populus trichocarpa
Potri.001G153400 5.0kb downstream 5.0kb downstream 8771 true Chr01: 12659239-12668009 Populus trichocarpa
Potri.001G153400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 12659239-12664238 Populus trichocarpa
Potri.001G153400 10.0kb upstream 10.0kb upstream 13771 true Chr01: 12664239-12678009 Populus trichocarpa
Potri.001G153400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 12668010-12678009 Populus trichocarpa
Potri.001G153400 10.0kb downstream 10.0kb downstream 13771 true Chr01: 12654239-12668009 Populus trichocarpa
Potri.001G153400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 12654239-12664238 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122388043 5262 Malpighiales View MSA
124252256 5268 Malvidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain