Gene : Potri.001G393800 P. trichocarpa v3.1
Defline:  (1 of 2) PTHR10543//PTHR10543:SF26 - BETA-CAROTENE DIOXYGENASE // 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  4061
Name:  ? Potri.001G393800 Secondary Identifier:  ? PAC:37274954
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-695 Populus trichocarpa pathologic  

Genomics

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Gene Structure Displayer

Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G393800 0.5kb upstream 0.5kb upstream 3156 true Chr01: 41294599-41297754 Populus trichocarpa
Potri.001G393800 0.5kb upstream 0.5kb upstream 500 false Chr01: 41294599-41295098 Populus trichocarpa
Potri.001G393800 0.5kb downstream 0.5kb downstream 3156 true Chr01: 41295099-41298254 Populus trichocarpa
Potri.001G393800 0.5kb downstream 0.5kb downstream 500 false Chr01: 41297755-41298254 Populus trichocarpa
Potri.001G393800 1.0kb upstream 1.0kb upstream 3656 true Chr01: 41294099-41297754 Populus trichocarpa
Potri.001G393800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 41294099-41295098 Populus trichocarpa
Potri.001G393800 1.0kb downstream 1.0kb downstream 3656 true Chr01: 41295099-41298754 Populus trichocarpa
Potri.001G393800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 41297755-41298754 Populus trichocarpa
Potri.001G393800 2.0kb upstream 2.0kb upstream 4656 true Chr01: 41293099-41297754 Populus trichocarpa
Potri.001G393800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 41293099-41295098 Populus trichocarpa
Potri.001G393800 2.0kb downstream 2.0kb downstream 4656 true Chr01: 41295099-41299754 Populus trichocarpa
Potri.001G393800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 41297755-41299754 Populus trichocarpa
Potri.001G393800 5.0kb upstream 5.0kb upstream 7656 true Chr01: 41290099-41297754 Populus trichocarpa
Potri.001G393800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 41290099-41295098 Populus trichocarpa
Potri.001G393800 5.0kb downstream 5.0kb downstream 7656 true Chr01: 41295099-41302754 Populus trichocarpa
Potri.001G393800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 41297755-41302754 Populus trichocarpa
Potri.001G393800 10.0kb upstream 10.0kb upstream 12656 true Chr01: 41285099-41297754 Populus trichocarpa
Potri.001G393800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 41285099-41295098 Populus trichocarpa
Potri.001G393800 10.0kb downstream 10.0kb downstream 12656 true Chr01: 41295099-41307754 Populus trichocarpa
Potri.001G393800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 41297755-41307754 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122461041 5262 Malpighiales View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain