Gene : Potri.004G090600 P. trichocarpa v3.1
Defline:  (1 of 6) K13789 - geranylgeranyl diphosphate synthase, type II (GGPS) Genomic Order:  919
Name:  ? Potri.004G090600 Secondary Identifier:  ? PAC:37229640
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5120 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5910 Populus trichocarpa pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.004G090600 0.5kb upstream 0.5kb upstream 1598 true Chr04: 7706701-7708298 Populus trichocarpa
Potri.004G090600 0.5kb upstream 0.5kb upstream 500 false Chr04: 7707799-7708298 Populus trichocarpa
Potri.004G090600 0.5kb downstream 0.5kb downstream 1598 true Chr04: 7706201-7707798 Populus trichocarpa
Potri.004G090600 0.5kb downstream 0.5kb downstream 500 false Chr04: 7706201-7706700 Populus trichocarpa
Potri.004G090600 1.0kb upstream 1.0kb upstream 2098 true Chr04: 7706701-7708798 Populus trichocarpa
Potri.004G090600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7707799-7708798 Populus trichocarpa
Potri.004G090600 1.0kb downstream 1.0kb downstream 2098 true Chr04: 7705701-7707798 Populus trichocarpa
Potri.004G090600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7705701-7706700 Populus trichocarpa
Potri.004G090600 2.0kb upstream 2.0kb upstream 3098 true Chr04: 7706701-7709798 Populus trichocarpa
Potri.004G090600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7707799-7709798 Populus trichocarpa
Potri.004G090600 2.0kb downstream 2.0kb downstream 3098 true Chr04: 7704701-7707798 Populus trichocarpa
Potri.004G090600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7704701-7706700 Populus trichocarpa
Potri.004G090600 5.0kb upstream 5.0kb upstream 6098 true Chr04: 7706701-7712798 Populus trichocarpa
Potri.004G090600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7707799-7712798 Populus trichocarpa
Potri.004G090600 5.0kb downstream 5.0kb downstream 6098 true Chr04: 7701701-7707798 Populus trichocarpa
Potri.004G090600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7701701-7706700 Populus trichocarpa
Potri.004G090600 10.0kb upstream 10.0kb upstream 11098 true Chr04: 7706701-7717798 Populus trichocarpa
Potri.004G090600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7707799-7717798 Populus trichocarpa
Potri.004G090600 10.0kb downstream 10.0kb downstream 11098 true Chr04: 7696701-7707798 Populus trichocarpa
Potri.004G090600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7696701-7706700 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122451890 5262 Malpighiales View MSA
124251250 5268 Malvidae View MSA
124051358 5270 Rosid View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain