Gene : Potri.004G161200 P. trichocarpa v3.1
Defline:  (1 of 2) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  1636
Name:  ? Potri.004G161200 Secondary Identifier:  ? PAC:37229718
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-2541 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5670 Populus trichocarpa pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.004G161200 0.5kb upstream 0.5kb upstream 6350 true Chr04: 18167200-18173549 Populus trichocarpa
Potri.004G161200 0.5kb upstream 0.5kb upstream 500 false Chr04: 18167200-18167699 Populus trichocarpa
Potri.004G161200 0.5kb downstream 0.5kb downstream 6350 true Chr04: 18167700-18174049 Populus trichocarpa
Potri.004G161200 0.5kb downstream 0.5kb downstream 500 false Chr04: 18173550-18174049 Populus trichocarpa
Potri.004G161200 1.0kb upstream 1.0kb upstream 6850 true Chr04: 18166700-18173549 Populus trichocarpa
Potri.004G161200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 18166700-18167699 Populus trichocarpa
Potri.004G161200 1.0kb downstream 1.0kb downstream 6850 true Chr04: 18167700-18174549 Populus trichocarpa
Potri.004G161200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 18173550-18174549 Populus trichocarpa
Potri.004G161200 2.0kb upstream 2.0kb upstream 7850 true Chr04: 18165700-18173549 Populus trichocarpa
Potri.004G161200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 18165700-18167699 Populus trichocarpa
Potri.004G161200 2.0kb downstream 2.0kb downstream 7850 true Chr04: 18167700-18175549 Populus trichocarpa
Potri.004G161200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 18173550-18175549 Populus trichocarpa
Potri.004G161200 5.0kb upstream 5.0kb upstream 10850 true Chr04: 18162700-18173549 Populus trichocarpa
Potri.004G161200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 18162700-18167699 Populus trichocarpa
Potri.004G161200 5.0kb downstream 5.0kb downstream 10850 true Chr04: 18167700-18178549 Populus trichocarpa
Potri.004G161200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 18173550-18178549 Populus trichocarpa
Potri.004G161200 10.0kb upstream 10.0kb upstream 15850 true Chr04: 18157700-18173549 Populus trichocarpa
Potri.004G161200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 18157700-18167699 Populus trichocarpa
Potri.004G161200 10.0kb downstream 10.0kb downstream 15850 true Chr04: 18167700-18183549 Populus trichocarpa
Potri.004G161200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 18173550-18183549 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122433750 5262 Malpighiales View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain