Gene : Potri.004G140100 P. trichocarpa v3.1
Defline:  (1 of 4) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  1422
Name:  ? Potri.004G140100 Secondary Identifier:  ? PAC:37230238
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-7511 Populus trichocarpa pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.004G140100 0.5kb upstream 0.5kb upstream 2068 true Chr04: 16327712-16329779 Populus trichocarpa
Potri.004G140100 0.5kb upstream 0.5kb upstream 500 false Chr04: 16329280-16329779 Populus trichocarpa
Potri.004G140100 0.5kb downstream 0.5kb downstream 2068 true Chr04: 16327212-16329279 Populus trichocarpa
Potri.004G140100 0.5kb downstream 0.5kb downstream 500 false Chr04: 16327212-16327711 Populus trichocarpa
Potri.004G140100 1.0kb upstream 1.0kb upstream 2568 true Chr04: 16327712-16330279 Populus trichocarpa
Potri.004G140100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 16329280-16330279 Populus trichocarpa
Potri.004G140100 1.0kb downstream 1.0kb downstream 2568 true Chr04: 16326712-16329279 Populus trichocarpa
Potri.004G140100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 16326712-16327711 Populus trichocarpa
Potri.004G140100 2.0kb upstream 2.0kb upstream 3568 true Chr04: 16327712-16331279 Populus trichocarpa
Potri.004G140100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 16329280-16331279 Populus trichocarpa
Potri.004G140100 2.0kb downstream 2.0kb downstream 3568 true Chr04: 16325712-16329279 Populus trichocarpa
Potri.004G140100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 16325712-16327711 Populus trichocarpa
Potri.004G140100 5.0kb upstream 5.0kb upstream 6568 true Chr04: 16327712-16334279 Populus trichocarpa
Potri.004G140100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 16329280-16334279 Populus trichocarpa
Potri.004G140100 5.0kb downstream 5.0kb downstream 6568 true Chr04: 16322712-16329279 Populus trichocarpa
Potri.004G140100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 16322712-16327711 Populus trichocarpa
Potri.004G140100 10.0kb upstream 10.0kb upstream 11568 true Chr04: 16327712-16339279 Populus trichocarpa
Potri.004G140100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 16329280-16339279 Populus trichocarpa
Potri.004G140100 10.0kb downstream 10.0kb downstream 11568 true Chr04: 16317712-16329279 Populus trichocarpa
Potri.004G140100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 16317712-16327711 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122427012 5262 Malpighiales View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain