Gene : Potri.005G043400 P. trichocarpa v3.1
Defline:  (1 of 2) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  455
Name:  ? Potri.005G043400 Secondary Identifier:  ? PAC:37263939
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa ARO-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6163 Populus trichocarpa pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G043400 0.5kb upstream 0.5kb upstream 6779 true Chr05: 3189385-3196163 Populus trichocarpa
Potri.005G043400 0.5kb upstream 0.5kb upstream 500 false Chr05: 3195664-3196163 Populus trichocarpa
Potri.005G043400 0.5kb downstream 0.5kb downstream 6779 true Chr05: 3188885-3195663 Populus trichocarpa
Potri.005G043400 0.5kb downstream 0.5kb downstream 500 false Chr05: 3188885-3189384 Populus trichocarpa
Potri.005G043400 1.0kb upstream 1.0kb upstream 7279 true Chr05: 3189385-3196663 Populus trichocarpa
Potri.005G043400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3195664-3196663 Populus trichocarpa
Potri.005G043400 1.0kb downstream 1.0kb downstream 7279 true Chr05: 3188385-3195663 Populus trichocarpa
Potri.005G043400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3188385-3189384 Populus trichocarpa
Potri.005G043400 2.0kb upstream 2.0kb upstream 8279 true Chr05: 3189385-3197663 Populus trichocarpa
Potri.005G043400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3195664-3197663 Populus trichocarpa
Potri.005G043400 2.0kb downstream 2.0kb downstream 8279 true Chr05: 3187385-3195663 Populus trichocarpa
Potri.005G043400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3187385-3189384 Populus trichocarpa
Potri.005G043400 5.0kb upstream 5.0kb upstream 11279 true Chr05: 3189385-3200663 Populus trichocarpa
Potri.005G043400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3195664-3200663 Populus trichocarpa
Potri.005G043400 5.0kb downstream 5.0kb downstream 11279 true Chr05: 3184385-3195663 Populus trichocarpa
Potri.005G043400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3184385-3189384 Populus trichocarpa
Potri.005G043400 10.0kb upstream 10.0kb upstream 16279 true Chr05: 3189385-3205663 Populus trichocarpa
Potri.005G043400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3195664-3205663 Populus trichocarpa
Potri.005G043400 10.0kb downstream 10.0kb downstream 16279 true Chr05: 3179385-3195663 Populus trichocarpa
Potri.005G043400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3179385-3189384 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
122461731 5262 Malpighiales View MSA
124246373 5268 Malvidae View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain