Gene : Potri.005G091400 P. trichocarpa v3.1
Defline:  (1 of 3) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  962
Name:  ? Potri.005G091400 Secondary Identifier:  ? PAC:37265957
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.005G091400 0.5kb upstream 0.5kb upstream 4751 true Chr05: 6798065-6802815 Populus trichocarpa
Potri.005G091400 0.5kb upstream 0.5kb upstream 500 false Chr05: 6802316-6802815 Populus trichocarpa
Potri.005G091400 0.5kb downstream 0.5kb downstream 4751 true Chr05: 6797565-6802315 Populus trichocarpa
Potri.005G091400 0.5kb downstream 0.5kb downstream 500 false Chr05: 6797565-6798064 Populus trichocarpa
Potri.005G091400 1.0kb upstream 1.0kb upstream 5251 true Chr05: 6798065-6803315 Populus trichocarpa
Potri.005G091400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 6802316-6803315 Populus trichocarpa
Potri.005G091400 1.0kb downstream 1.0kb downstream 5251 true Chr05: 6797065-6802315 Populus trichocarpa
Potri.005G091400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 6797065-6798064 Populus trichocarpa
Potri.005G091400 2.0kb upstream 2.0kb upstream 6251 true Chr05: 6798065-6804315 Populus trichocarpa
Potri.005G091400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 6802316-6804315 Populus trichocarpa
Potri.005G091400 2.0kb downstream 2.0kb downstream 6251 true Chr05: 6796065-6802315 Populus trichocarpa
Potri.005G091400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 6796065-6798064 Populus trichocarpa
Potri.005G091400 5.0kb upstream 5.0kb upstream 9251 true Chr05: 6798065-6807315 Populus trichocarpa
Potri.005G091400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 6802316-6807315 Populus trichocarpa
Potri.005G091400 5.0kb downstream 5.0kb downstream 9251 true Chr05: 6793065-6802315 Populus trichocarpa
Potri.005G091400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 6793065-6798064 Populus trichocarpa
Potri.005G091400 10.0kb upstream 10.0kb upstream 14251 true Chr05: 6798065-6812315 Populus trichocarpa
Potri.005G091400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 6802316-6812315 Populus trichocarpa
Potri.005G091400 10.0kb downstream 10.0kb downstream 14251 true Chr05: 6788065-6802315 Populus trichocarpa
Potri.005G091400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 6788065-6798064 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122460895 5262 Malpighiales View MSA
124250817 5268 Malvidae View MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain