Gene : Potri.008G147200 P. trichocarpa v3.1
Defline:  (1 of 4) K00797 - spermidine synthase (speE, SRM) Genomic Order:  1530
Name:  ? Potri.008G147200 Secondary Identifier:  ? PAC:37271312
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa BSUBPOLYAMSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa POLYAMINSYN3-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-7528 Populus trichocarpa pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.008G147200 0.5kb upstream 0.5kb upstream 4644 true Chr08: 9911041-9915684 Populus trichocarpa
Potri.008G147200 0.5kb upstream 0.5kb upstream 500 false Chr08: 9911041-9911540 Populus trichocarpa
Potri.008G147200 0.5kb downstream 0.5kb downstream 4644 true Chr08: 9911541-9916184 Populus trichocarpa
Potri.008G147200 0.5kb downstream 0.5kb downstream 500 false Chr08: 9915685-9916184 Populus trichocarpa
Potri.008G147200 1.0kb upstream 1.0kb upstream 5144 true Chr08: 9910541-9915684 Populus trichocarpa
Potri.008G147200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9910541-9911540 Populus trichocarpa
Potri.008G147200 1.0kb downstream 1.0kb downstream 5144 true Chr08: 9911541-9916684 Populus trichocarpa
Potri.008G147200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9915685-9916684 Populus trichocarpa
Potri.008G147200 2.0kb upstream 2.0kb upstream 6144 true Chr08: 9909541-9915684 Populus trichocarpa
Potri.008G147200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9909541-9911540 Populus trichocarpa
Potri.008G147200 2.0kb downstream 2.0kb downstream 6144 true Chr08: 9911541-9917684 Populus trichocarpa
Potri.008G147200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9915685-9917684 Populus trichocarpa
Potri.008G147200 5.0kb upstream 5.0kb upstream 9144 true Chr08: 9906541-9915684 Populus trichocarpa
Potri.008G147200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9906541-9911540 Populus trichocarpa
Potri.008G147200 5.0kb downstream 5.0kb downstream 9144 true Chr08: 9911541-9920684 Populus trichocarpa
Potri.008G147200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9915685-9920684 Populus trichocarpa
Potri.008G147200 10.0kb upstream 10.0kb upstream 14144 true Chr08: 9901541-9915684 Populus trichocarpa
Potri.008G147200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9901541-9911540 Populus trichocarpa
Potri.008G147200 10.0kb downstream 10.0kb downstream 14144 true Chr08: 9911541-9925684 Populus trichocarpa
Potri.008G147200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9915685-9925684 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122427762 5262 Malpighiales View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain