Gene : Potri.009G139600 P. trichocarpa v3.1
Defline:  (1 of 1) PTHR12001//PTHR12001:SF41 - GERANYLGERANYL PYROPHOSPHATE SYNTHASE // HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  1433
Name:  ? Potri.009G139600 Secondary Identifier:  ? PAC:37228261
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5120 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5910 Populus trichocarpa pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.009G139600 0.5kb upstream 0.5kb upstream 3099 true Chr09: 11156034-11159132 Populus trichocarpa
Potri.009G139600 0.5kb upstream 0.5kb upstream 500 false Chr09: 11158633-11159132 Populus trichocarpa
Potri.009G139600 0.5kb downstream 0.5kb downstream 3099 true Chr09: 11155534-11158632 Populus trichocarpa
Potri.009G139600 0.5kb downstream 0.5kb downstream 500 false Chr09: 11155534-11156033 Populus trichocarpa
Potri.009G139600 1.0kb upstream 1.0kb upstream 3599 true Chr09: 11156034-11159632 Populus trichocarpa
Potri.009G139600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 11158633-11159632 Populus trichocarpa
Potri.009G139600 1.0kb downstream 1.0kb downstream 3599 true Chr09: 11155034-11158632 Populus trichocarpa
Potri.009G139600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 11155034-11156033 Populus trichocarpa
Potri.009G139600 2.0kb upstream 2.0kb upstream 4599 true Chr09: 11156034-11160632 Populus trichocarpa
Potri.009G139600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 11158633-11160632 Populus trichocarpa
Potri.009G139600 2.0kb downstream 2.0kb downstream 4599 true Chr09: 11154034-11158632 Populus trichocarpa
Potri.009G139600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 11154034-11156033 Populus trichocarpa
Potri.009G139600 5.0kb upstream 5.0kb upstream 7599 true Chr09: 11156034-11163632 Populus trichocarpa
Potri.009G139600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 11158633-11163632 Populus trichocarpa
Potri.009G139600 5.0kb downstream 5.0kb downstream 7599 true Chr09: 11151034-11158632 Populus trichocarpa
Potri.009G139600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 11151034-11156033 Populus trichocarpa
Potri.009G139600 10.0kb upstream 10.0kb upstream 12599 true Chr09: 11156034-11168632 Populus trichocarpa
Potri.009G139600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 11158633-11168632 Populus trichocarpa
Potri.009G139600 10.0kb downstream 10.0kb downstream 12599 true Chr09: 11146034-11158632 Populus trichocarpa
Potri.009G139600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 11146034-11156033 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122456389 5262 Malpighiales View MSA
124238583 5268 Malvidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain