Gene : Potri.009G159800 P. trichocarpa v3.1
Defline:  (1 of 2) K14593 - capsanthin/capsorubin synthase (CCS1) Genomic Order:  1642
Name:  ? Potri.009G159800 Secondary Identifier:  ? PAC:37228614
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6809 Populus trichocarpa pathologic  
Ptrichocarpa PWY-695 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.009G159800 0.5kb upstream 0.5kb upstream 2360 true Chr09: 12347117-12349476 Populus trichocarpa
Potri.009G159800 0.5kb upstream 0.5kb upstream 500 false Chr09: 12347117-12347616 Populus trichocarpa
Potri.009G159800 0.5kb downstream 0.5kb downstream 2360 true Chr09: 12347617-12349976 Populus trichocarpa
Potri.009G159800 0.5kb downstream 0.5kb downstream 500 false Chr09: 12349477-12349976 Populus trichocarpa
Potri.009G159800 1.0kb upstream 1.0kb upstream 2860 true Chr09: 12346617-12349476 Populus trichocarpa
Potri.009G159800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 12346617-12347616 Populus trichocarpa
Potri.009G159800 1.0kb downstream 1.0kb downstream 2860 true Chr09: 12347617-12350476 Populus trichocarpa
Potri.009G159800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 12349477-12350476 Populus trichocarpa
Potri.009G159800 2.0kb upstream 2.0kb upstream 3860 true Chr09: 12345617-12349476 Populus trichocarpa
Potri.009G159800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 12345617-12347616 Populus trichocarpa
Potri.009G159800 2.0kb downstream 2.0kb downstream 3860 true Chr09: 12347617-12351476 Populus trichocarpa
Potri.009G159800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 12349477-12351476 Populus trichocarpa
Potri.009G159800 5.0kb upstream 5.0kb upstream 6860 true Chr09: 12342617-12349476 Populus trichocarpa
Potri.009G159800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 12342617-12347616 Populus trichocarpa
Potri.009G159800 5.0kb downstream 5.0kb downstream 6860 true Chr09: 12347617-12354476 Populus trichocarpa
Potri.009G159800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 12349477-12354476 Populus trichocarpa
Potri.009G159800 10.0kb upstream 10.0kb upstream 11860 true Chr09: 12337617-12349476 Populus trichocarpa
Potri.009G159800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 12337617-12347616 Populus trichocarpa
Potri.009G159800 10.0kb downstream 10.0kb downstream 11860 true Chr09: 12347617-12359476 Populus trichocarpa
Potri.009G159800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 12349477-12359476 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122448019 5262 Malpighiales View MSA
124246200 5268 Malvidae View MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain