Gene : Potri.011G084100 P. trichocarpa v3.1
Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  868
Name:  ? Potri.011G084100 Secondary Identifier:  ? PAC:37239705
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-695 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G084100 0.5kb upstream 0.5kb upstream 2294 true Chr11: 8609333-8611626 Populus trichocarpa
Potri.011G084100 0.5kb upstream 0.5kb upstream 500 false Chr11: 8611127-8611626 Populus trichocarpa
Potri.011G084100 0.5kb downstream 0.5kb downstream 2294 true Chr11: 8608833-8611126 Populus trichocarpa
Potri.011G084100 0.5kb downstream 0.5kb downstream 500 false Chr11: 8608833-8609332 Populus trichocarpa
Potri.011G084100 1.0kb upstream 1.0kb upstream 2794 true Chr11: 8609333-8612126 Populus trichocarpa
Potri.011G084100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8611127-8612126 Populus trichocarpa
Potri.011G084100 1.0kb downstream 1.0kb downstream 2794 true Chr11: 8608333-8611126 Populus trichocarpa
Potri.011G084100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8608333-8609332 Populus trichocarpa
Potri.011G084100 2.0kb upstream 2.0kb upstream 3794 true Chr11: 8609333-8613126 Populus trichocarpa
Potri.011G084100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8611127-8613126 Populus trichocarpa
Potri.011G084100 2.0kb downstream 2.0kb downstream 3794 true Chr11: 8607333-8611126 Populus trichocarpa
Potri.011G084100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8607333-8609332 Populus trichocarpa
Potri.011G084100 5.0kb upstream 5.0kb upstream 6794 true Chr11: 8609333-8616126 Populus trichocarpa
Potri.011G084100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8611127-8616126 Populus trichocarpa
Potri.011G084100 5.0kb downstream 5.0kb downstream 6794 true Chr11: 8604333-8611126 Populus trichocarpa
Potri.011G084100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8604333-8609332 Populus trichocarpa
Potri.011G084100 10.0kb upstream 10.0kb upstream 11794 true Chr11: 8609333-8621126 Populus trichocarpa
Potri.011G084100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8611127-8621126 Populus trichocarpa
Potri.011G084100 10.0kb downstream 10.0kb downstream 11794 true Chr11: 8599333-8611126 Populus trichocarpa
Potri.011G084100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8599333-8609332 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122461041 5262 Malpighiales View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain