Gene : Potri.011G112400 P. trichocarpa v3.1
Defline:  (1 of 2) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  1156
Name:  ? Potri.011G112400 Secondary Identifier:  ? PAC:37240573
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-695 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G112400 0.5kb upstream 0.5kb upstream 2925 true Chr11: 13737655-13740579 Populus trichocarpa
Potri.011G112400 0.5kb upstream 0.5kb upstream 500 false Chr11: 13737655-13738154 Populus trichocarpa
Potri.011G112400 0.5kb downstream 0.5kb downstream 2925 true Chr11: 13738155-13741079 Populus trichocarpa
Potri.011G112400 0.5kb downstream 0.5kb downstream 500 false Chr11: 13740580-13741079 Populus trichocarpa
Potri.011G112400 1.0kb upstream 1.0kb upstream 3425 true Chr11: 13737155-13740579 Populus trichocarpa
Potri.011G112400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 13737155-13738154 Populus trichocarpa
Potri.011G112400 1.0kb downstream 1.0kb downstream 3425 true Chr11: 13738155-13741579 Populus trichocarpa
Potri.011G112400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 13740580-13741579 Populus trichocarpa
Potri.011G112400 2.0kb upstream 2.0kb upstream 4425 true Chr11: 13736155-13740579 Populus trichocarpa
Potri.011G112400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 13736155-13738154 Populus trichocarpa
Potri.011G112400 2.0kb downstream 2.0kb downstream 4425 true Chr11: 13738155-13742579 Populus trichocarpa
Potri.011G112400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 13740580-13742579 Populus trichocarpa
Potri.011G112400 5.0kb upstream 5.0kb upstream 7425 true Chr11: 13733155-13740579 Populus trichocarpa
Potri.011G112400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 13733155-13738154 Populus trichocarpa
Potri.011G112400 5.0kb downstream 5.0kb downstream 7425 true Chr11: 13738155-13745579 Populus trichocarpa
Potri.011G112400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 13740580-13745579 Populus trichocarpa
Potri.011G112400 10.0kb upstream 10.0kb upstream 12425 true Chr11: 13728155-13740579 Populus trichocarpa
Potri.011G112400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 13728155-13738154 Populus trichocarpa
Potri.011G112400 10.0kb downstream 10.0kb downstream 12425 true Chr11: 13738155-13750579 Populus trichocarpa
Potri.011G112400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 13740580-13750579 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122461041 5262 Malpighiales View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain