Gene : Potri.011G159000 P. trichocarpa v3.1
Defline:  (1 of 3) PTHR31375:SF29 - PECTIN LYASE-LIKE PROTEIN-RELATED Genomic Order:  1628
Name:  ? Potri.011G159000 Secondary Identifier:  ? PAC:37240388
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-1081 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G159000 0.5kb upstream 0.5kb upstream 3397 true Chr11: 17601041-17604437 Populus trichocarpa
Potri.011G159000 0.5kb upstream 0.5kb upstream 500 false Chr11: 17601041-17601540 Populus trichocarpa
Potri.011G159000 0.5kb downstream 0.5kb downstream 3397 true Chr11: 17601541-17604937 Populus trichocarpa
Potri.011G159000 0.5kb downstream 0.5kb downstream 500 false Chr11: 17604438-17604937 Populus trichocarpa
Potri.011G159000 1.0kb upstream 1.0kb upstream 3897 true Chr11: 17600541-17604437 Populus trichocarpa
Potri.011G159000 1.0kb upstream 1.0kb upstream 1000 false Chr11: 17600541-17601540 Populus trichocarpa
Potri.011G159000 1.0kb downstream 1.0kb downstream 3897 true Chr11: 17601541-17605437 Populus trichocarpa
Potri.011G159000 1.0kb downstream 1.0kb downstream 1000 false Chr11: 17604438-17605437 Populus trichocarpa
Potri.011G159000 2.0kb upstream 2.0kb upstream 4897 true Chr11: 17599541-17604437 Populus trichocarpa
Potri.011G159000 2.0kb upstream 2.0kb upstream 2000 false Chr11: 17599541-17601540 Populus trichocarpa
Potri.011G159000 2.0kb downstream 2.0kb downstream 4897 true Chr11: 17601541-17606437 Populus trichocarpa
Potri.011G159000 2.0kb downstream 2.0kb downstream 2000 false Chr11: 17604438-17606437 Populus trichocarpa
Potri.011G159000 5.0kb upstream 5.0kb upstream 7897 true Chr11: 17596541-17604437 Populus trichocarpa
Potri.011G159000 5.0kb upstream 5.0kb upstream 5000 false Chr11: 17596541-17601540 Populus trichocarpa
Potri.011G159000 5.0kb downstream 5.0kb downstream 7897 true Chr11: 17601541-17609437 Populus trichocarpa
Potri.011G159000 5.0kb downstream 5.0kb downstream 5000 false Chr11: 17604438-17609437 Populus trichocarpa
Potri.011G159000 10.0kb upstream 10.0kb upstream 12897 true Chr11: 17591541-17604437 Populus trichocarpa
Potri.011G159000 10.0kb upstream 10.0kb upstream 10000 false Chr11: 17591541-17601540 Populus trichocarpa
Potri.011G159000 10.0kb downstream 10.0kb downstream 12897 true Chr11: 17601541-17614437 Populus trichocarpa
Potri.011G159000 10.0kb downstream 10.0kb downstream 10000 false Chr11: 17604438-17614437 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122463286 5262 Malpighiales View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain