Gene : Potri.018G043100 P. trichocarpa v3.1
Defline:  (1 of 21) 1.13.11.51 - 9-cis-epoxycarotenoid dioxygenase / VP14 Genomic Order:  438
Name:  ? Potri.018G043100 Secondary Identifier:  ? PAC:37247203
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-695 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.018G043100 0.5kb upstream 0.5kb upstream 3996 true Chr18: 3710554-3714549 Populus trichocarpa
Potri.018G043100 0.5kb upstream 0.5kb upstream 500 false Chr18: 3714050-3714549 Populus trichocarpa
Potri.018G043100 0.5kb downstream 0.5kb downstream 3996 true Chr18: 3710054-3714049 Populus trichocarpa
Potri.018G043100 0.5kb downstream 0.5kb downstream 500 false Chr18: 3710054-3710553 Populus trichocarpa
Potri.018G043100 1.0kb upstream 1.0kb upstream 4496 true Chr18: 3710554-3715049 Populus trichocarpa
Potri.018G043100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 3714050-3715049 Populus trichocarpa
Potri.018G043100 1.0kb downstream 1.0kb downstream 4496 true Chr18: 3709554-3714049 Populus trichocarpa
Potri.018G043100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 3709554-3710553 Populus trichocarpa
Potri.018G043100 2.0kb upstream 2.0kb upstream 5496 true Chr18: 3710554-3716049 Populus trichocarpa
Potri.018G043100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 3714050-3716049 Populus trichocarpa
Potri.018G043100 2.0kb downstream 2.0kb downstream 5496 true Chr18: 3708554-3714049 Populus trichocarpa
Potri.018G043100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 3708554-3710553 Populus trichocarpa
Potri.018G043100 5.0kb upstream 5.0kb upstream 8496 true Chr18: 3710554-3719049 Populus trichocarpa
Potri.018G043100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 3714050-3719049 Populus trichocarpa
Potri.018G043100 5.0kb downstream 5.0kb downstream 8496 true Chr18: 3705554-3714049 Populus trichocarpa
Potri.018G043100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 3705554-3710553 Populus trichocarpa
Potri.018G043100 10.0kb upstream 10.0kb upstream 13496 true Chr18: 3710554-3724049 Populus trichocarpa
Potri.018G043100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 3714050-3724049 Populus trichocarpa
Potri.018G043100 10.0kb downstream 10.0kb downstream 13496 true Chr18: 3700554-3714049 Populus trichocarpa
Potri.018G043100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 3700554-3710553 Populus trichocarpa

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122397366 5262 Malpighiales Singleton cluster - no MSA
124255379 5268 Malvidae View MSA
124041072 5270 Rosid View MSA
123748697 5271 Pentapetalae View MSA
122795171 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain